Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBN15_RS14975 Genome accession   NZ_CP033326
Coordinates   3442778..3443836 (-) Length   352 a.a.
NCBI ID   WP_104602515.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain ATCC 23378     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3437778..3448836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN15_RS14955 (EBN15_15000) - 3438865..3440829 (-) 1965 WP_159407503.1 type IV pilus secretin PilQ family protein -
  EBN15_RS14960 (EBN15_15005) - 3440849..3441382 (-) 534 WP_159407504.1 pilus assembly protein PilP -
  EBN15_RS14965 (EBN15_15010) - 3441379..3442044 (-) 666 WP_104602513.1 type 4a pilus biogenesis protein PilO -
  EBN15_RS14970 (EBN15_15015) - 3442041..3442778 (-) 738 WP_104602514.1 PilN domain-containing protein -
  EBN15_RS14975 (EBN15_15020) comM 3442778..3443836 (-) 1059 WP_104602515.1 pilus assembly protein PilM Machinery gene
  EBN15_RS14980 (EBN15_15025) - 3443955..3446477 (+) 2523 WP_159408015.1 penicillin-binding protein 1A -
  EBN15_RS14985 (EBN15_15030) - 3446722..3447369 (+) 648 WP_159407505.1 hypothetical protein -
  EBN15_RS14990 (EBN15_15035) - 3447543..3448832 (-) 1290 WP_104539991.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37664.25 Da        Isoelectric Point: 4.3924

>NTDB_id=322980 EBN15_RS14975 WP_104602515.1 3442778..3443836(-) (comM) [Xanthomonas cucurbitae strain ATCC 23378]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKARNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVSSELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=322980 EBN15_RS14975 WP_104602515.1 3442778..3443836(-) (comM) [Xanthomonas cucurbitae strain ATCC 23378]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTGATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTGTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAACACTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTAGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAGGAACGCGGCGGCGGCC
GTGGCCGGCTCGGCGGTCATCACCAAGCTGATCCCGATGCCCGCCGACCTGGACGACAGCGATCTGGAAGCGCAGGTCGA
GCTGGAGGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCTTCGCGCTCGGAGAACGTGGAGCTGCGCCAGTCGGCGCTGGAACTGGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTTTCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGTAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCCGGCCTGGCCAAGCGCCAGGGTGGCTTGCCGGAAAGCTACGAGGTCGAGGTGCTTGAGCCGTTCAAGGAGGCGACTGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGCGTGGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAGATGGTCGAAGAACAGCTGGGGGTGACCACCGTGGTGGCCAACCCGCTCGCA
CAGATGACGCTGGGTCCCAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCCGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466

Multiple sequence alignment