Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VS_RS08555 Genome accession   NC_011753
Coordinates   1969678..1970259 (-) Length   193 a.a.
NCBI ID   WP_012604232.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964678..1975259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS08535 (VS_1825) - 1964759..1966021 (-) 1263 WP_012604229.1 DUF945 family protein -
  VS_RS08540 (VS_1826) - 1966205..1968148 (+) 1944 WP_012604230.1 ATP-binding protein -
  VS_RS08545 (VS_1827) - 1968141..1968638 (+) 498 WP_012604231.1 response regulator -
  VS_RS08550 (VS_1828) - 1968998..1969552 (+) 555 WP_009847060.1 hypothetical protein -
  VS_RS08555 (VS_1829) tfoX 1969678..1970259 (-) 582 WP_012604232.1 TfoX/Sxy family DNA transformation protein Regulator
  VS_RS08565 (VS_1830) - 1970615..1971535 (+) 921 WP_012604233.1 HDOD domain-containing protein -
  VS_RS08570 (VS_1831) - 1971590..1972495 (+) 906 WP_012604234.1 lysine exporter LysO family protein -
  VS_RS08575 (VS_1832) - 1972670..1973197 (+) 528 WP_012604235.1 hypothetical protein -
  VS_RS08580 (VS_1833) panP 1973316..1974959 (+) 1644 WP_012604236.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22175.45 Da        Isoelectric Point: 8.6735

>NTDB_id=32278 VS_RS08555 WP_012604232.1 1969678..1970259(-) (tfoX) [Vibrio atlanticus]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEDCVFIRGGNLLDKKLTGLDCEKYRHVKKQTTATVNYYDITD
LFTSEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGASEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=32278 VS_RS08555 WP_012604232.1 1969678..1970259(-) (tfoX) [Vibrio atlanticus]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAACATCAAAAGCGCTCTATGTTTGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTGTTGAGTGAAGATTGTGTATTCATTCGAGGTGGGAACTTATTAGATAAAAAGC
TGACGGGGCTTGATTGTGAAAAGTATCGTCACGTAAAAAAGCAGACGACAGCAACCGTGAATTACTACGACATCACGGAT
CTCTTTACGTCTGAGCATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
AAAATCATCTGCTAGCCGTAGATTAAGGGATTTGCCTAACATGCAACTGACGTTAGAACGCATGGTTAAAAAGGCTGGAG
TGGATGATGTTTCAATGTTTATGCAGTTGGGTGCATCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGAAACGATGTT
GACCTAAAATTACTTTGGAAGTTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

72.021

100

0.72
  tfoX Vibrio parahaemolyticus RIMD 2210633

72.021

100

0.72
  tfoX Aliivibrio fischeri ES114

56.842

98.446

0.56

Multiple sequence alignment