Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VS_RS08005 Genome accession   NC_011753
Coordinates   1840269..1841693 (+) Length   474 a.a.
NCBI ID   WP_009846946.1    Uniprot ID   A0A2N7NC29
Organism   Vibrio atlanticus     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835269..1846693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS07985 (VS_1709) - 1835954..1836904 (+) 951 WP_041472825.1 hypothetical protein -
  VS_RS07990 (VS_1710) - 1836909..1837943 (-) 1035 WP_012604137.1 AraC family transcriptional regulator -
  VS_RS07995 (VS_1711) - 1838113..1839126 (+) 1014 WP_012604138.1 DUF2804 domain-containing protein -
  VS_RS08000 (VS_1712) - 1839214..1840062 (+) 849 WP_012604139.1 sterol desaturase family protein -
  VS_RS08005 (VS_1713) sbcB 1840269..1841693 (+) 1425 WP_009846946.1 exodeoxyribonuclease I Machinery gene
  VS_RS08010 (VS_1714) - 1841719..1842090 (+) 372 WP_041472826.1 CidA/LrgA family protein -
  VS_RS08015 (VS_1715) - 1842093..1842770 (+) 678 WP_012604141.1 LrgB family protein -
  VS_RS08020 (VS_1716) cdd 1843057..1843944 (+) 888 WP_012604142.1 cytidine deaminase -
  VS_RS08025 (VS_1717) purT 1844112..1845287 (+) 1176 WP_012604143.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VS_RS08030 (VS_1718) - 1845418..1846071 (-) 654 WP_012604144.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54707.97 Da        Isoelectric Point: 4.8199

>NTDB_id=32276 VS_RS08005 WP_009846946.1 1840269..1841693(+) (sbcB) [Vibrio atlanticus]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=32276 VS_RS08005 WP_009846946.1 1840269..1841693(+) (sbcB) [Vibrio atlanticus]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCGTTGATCACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTCCCTGAGCCA
GAGTTTATCGCTAAGATCCATGCTGAGTTGGCGAGACCAAACACCACAAGCCTTGGCTACAACAGTATCCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAATTTCATTGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTATTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACACGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCAAAGAAGCTTAAAGCTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTAAATGACCTAGTTGATATCGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACTAATCAAAATGCGGTTATCGTGGTTGATTTAGCTAAAGATCCAAG
CCCACTACTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGAGTGAAGACGAGCTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACATCCAGAGATCCGCGAAAAACTCAT
TGGCCTGTACTCTCAAGAGCGCGAGTACGAAAAGAGTGATGATGTTGATACCCACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTCAGTGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCACGTAACTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
AAACCATTGTCGTGAGTTTTATGAATGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7NC29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.533

99.789

0.764

Multiple sequence alignment