Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FF958_RS09860 Genome accession   NZ_CP040622
Coordinates   1978983..1979606 (-) Length   207 a.a.
NCBI ID   WP_001045133.1    Uniprot ID   A0A0H2XHP5
Organism   Staphylococcus aureus strain JKD6004     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973983..1984606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF958_RS09830 (FF958_09830) - 1974479..1975675 (-) 1197 WP_000238227.1 exonuclease SbcCD subunit D -
  FF958_RS09835 (FF958_09835) - 1975966..1976064 (-) 99 WP_001791795.1 hypothetical protein -
  FF958_RS09845 (FF958_09845) - 1976447..1976791 (-) 345 WP_000290301.1 YlbF/YmcA family competence regulator -
  FF958_RS09850 (FF958_09850) - 1976860..1977984 (-) 1125 WP_000992527.1 DUF445 domain-containing protein -
  FF958_RS09855 (FF958_09855) - 1978163..1978627 (-) 465 WP_000375864.1 helix-turn-helix transcriptional regulator -
  FF958_RS09860 (FF958_09860) vraR 1978983..1979606 (-) 624 WP_001045133.1 response regulator transcription factor Regulator
  FF958_RS09865 (FF958_09865) - 1979628..1980740 (-) 1113 WP_000437967.1 GAF domain-containing sensor histidine kinase -
  FF958_RS09870 (FF958_09870) - 1980903..1981724 (+) 822 WP_000669375.1 RluA family pseudouridine synthase -
  FF958_RS09875 (FF958_09875) fumC 1982187..1983572 (-) 1386 WP_000116224.1 class II fumarate hydratase -
  FF958_RS09880 (FF958_09880) - 1983768..1984163 (-) 396 WP_000901021.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23895.56 Da        Isoelectric Point: 5.5730

>NTDB_id=322391 FF958_RS09860 WP_001045133.1 1978983..1979606(-) (vraR) [Staphylococcus aureus strain JKD6004]
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVL
VLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVK
GKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=322391 FF958_RS09860 WP_001045133.1 1978983..1979606(-) (vraR) [Staphylococcus aureus strain JKD6004]
ATGAACAAAGTAATATTAGTAGATGACCATTATATTGTGCGACAAGGATTGCGATTTTTATTATCCACGATTGAAAACAT
AGAAGTTTTACAAGACTTTGCAGATGGAGAAACATTTTTAGAATATTTAAAAGAGCATGAGCACCCTGATATTGTGCTAT
TAGATTTAGTGATGCCTGGCATGAATGGTATTGAAATTACGGAATATATTAAGGCACATTATCCGGATATTAAAGTTTTG
GTATTAACAAGTTATGTTGATGATGAACATGTAATTTCAGCAATCAATAAAGGTGCTGATGGTTATGAAATGAAAGACGT
TGAGCCTCAGCAATTAATTGAAACTATTAGACGAGTTATGAACGGTGAAAAAATGATACATCCTAAGGCACAAGATGTAT
TCGAAACAGTTAGCCAAAAACCACACTACACGAATAAGTTGTCAAAGAGAGAAATTGAAGTGTTACGTGAAATGGTTAAA
GGTAAAACAAATAAAGAGATTGCAGAAACTTTATTTGTATCTGAAAAAACAATTAAAACACATGTCAGTCATATATTTAG
TAAATTACAAGTTAGCGATCGTACACAAGCAGCAATTTATGCAATGGAAAATAAGTTGATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XHP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.58

100

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

35.135

100

0.377
  letA Legionella pneumophila str. Paris

35.714

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.714

100

0.362