Detailed information NTG0322325

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: EBA21_RS06180
• Genome accession: NZ_CP033192
• Coordinates: 1255845..1256903 (+)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain NX0260
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1250845..1261903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBA21_RS06170 (EBA21_06165)	-	1252240..1252890 (-)	651	WP_011407794.1	hypothetical protein	-
EBA21_RS06175 (EBA21_06170)	-	1253200..1255629 (-)	2430	WP_011257992.1	penicillin-binding protein 1A	-
EBA21_RS06180 (EBA21_06175)	comM	1255845..1256903 (+)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
EBA21_RS06185 (EBA21_06180)	-	1256903..1257661 (+)	759	WP_011257994.1	PilN domain-containing protein	-
EBA21_RS06190 (EBA21_06185)	-	1257658..1258323 (+)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
EBA21_RS06195 (EBA21_06190)	-	1258320..1258853 (+)	534	WP_011257996.1	pilus assembly protein PilP	-
EBA21_RS06200 (EBA21_06195)	-	1258873..1260822 (+)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
EBA21_RS06205 (EBA21_06200)	-	1261420..1261421 (-)	2	WP_099051302.1	IS5 family transposase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=322325 EBA21_RS06180 WP_011407795.1 1255845..1256903(+) (comM) [Xanthomonas oryzae pv. oryzae strain NX0260]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=322325 EBA21_RS06180 WP_011407795.1 1255845..1256903(+) (comM) [Xanthomonas oryzae pv. oryzae strain NX0260]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477