Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBA14_RS17620 Genome accession   NZ_CP033172
Coordinates   3685828..3686886 (-) Length   352 a.a.
NCBI ID   WP_033004132.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain Dak16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3680828..3691886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA14_RS17600 (EBA14_17565) - 3681885..3683834 (-) 1950 WP_024745289.1 type IV pilus secretin PilQ family protein -
  EBA14_RS17605 (EBA14_17570) - 3683854..3684387 (-) 534 WP_011257996.1 pilus assembly protein PilP -
  EBA14_RS17610 (EBA14_17575) - 3684384..3685049 (-) 666 WP_024745288.1 type 4a pilus biogenesis protein PilO -
  EBA14_RS17615 (EBA14_17580) - 3685046..3685828 (-) 783 WP_053513053.1 PilN domain-containing protein -
  EBA14_RS17620 (EBA14_17585) comM 3685828..3686886 (-) 1059 WP_033004132.1 pilus assembly protein PilM Machinery gene
  EBA14_RS17625 (EBA14_17590) - 3687102..3689531 (+) 2430 WP_024745285.1 penicillin-binding protein 1A -
  EBA14_RS17630 (EBA14_17595) - 3689734..3691110 (+) 1377 WP_058419065.1 IS5 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37571.20 Da        Isoelectric Point: 4.3482

>NTDB_id=321955 EBA14_RS17620 WP_033004132.1 3685828..3686886(-) (comM) [Xanthomonas oryzae pv. oryzae strain Dak16]
MGLLPKSQSPLIGVDISSTAVKILQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALACLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=321955 EBA14_RS17620 WP_033004132.1 3685828..3686886(-) (comM) [Xanthomonas oryzae pv. oryzae strain Dak16]
GTGGGGCTTTTACCTAAGAGTCAGTCGCCACTAATTGGTGTCGACATTAGTTCTACTGCCGTGAAGATCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCTATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTCCTGCTGGCCGCATCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACTACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTACTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGTGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.992

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment