Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   GALLO_RS05335 Genome accession   NC_013798
Coordinates   1065416..1066096 (+) Length   226 a.a.
NCBI ID   WP_012961923.1    Uniprot ID   A0A1I7FSC7
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060416..1071096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS05310 (GALLO_1004) - 1061461..1062075 (+) 615 WP_012961919.1 histidine phosphatase family protein -
  GALLO_RS05315 (GALLO_1005) - 1062078..1062701 (+) 624 WP_012961920.1 histidine phosphatase family protein -
  GALLO_RS05320 (GALLO_1006) - 1062694..1063296 (+) 603 WP_012961921.1 histidine phosphatase family protein -
  GALLO_RS05325 (GALLO_1007) - 1063405..1064523 (+) 1119 WP_012961922.1 AI-2E family transporter -
  GALLO_RS05330 (GALLO_1008) - 1064530..1065369 (+) 840 WP_009854112.1 glycosyltransferase family 8 protein -
  GALLO_RS05335 (GALLO_1009) radC 1065416..1066096 (+) 681 WP_012961923.1 RadC family protein Machinery gene
  GALLO_RS05340 (GALLO_1010) - 1066246..1066893 (-) 648 WP_009854114.1 redox-sensing transcriptional repressor Rex -
  GALLO_RS05345 (GALLO_1011) - 1067039..1067386 (-) 348 WP_003064609.1 DUF1831 domain-containing protein -
  GALLO_RS05350 (GALLO_1012) - 1067388..1068503 (-) 1116 WP_012961924.1 cysteine desulfurase family protein -
  GALLO_RS05355 (GALLO_1013) - 1068511..1069482 (-) 972 WP_009854116.1 ribose-phosphate diphosphokinase -
  GALLO_RS05360 (GALLO_1014) - 1069568..1070137 (-) 570 WP_009854117.1 CYTH domain-containing protein -
  GALLO_RS05365 (GALLO_1015) - 1070270..1070935 (+) 666 WP_003064613.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26039.15 Da        Isoelectric Point: 6.7534

>NTDB_id=32190 GALLO_RS05335 WP_012961923.1 1065416..1066096(+) (radC) [Streptococcus gallolyticus UCN34]
MYAIEMKADAMLPRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFQHLSLQELQQINGIGYVKS
IEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLDTQNRIIEQRTIFIGSVRRSIAEPREILY
YACKNMATSVIIVHNHPSGSPEPSENDLQFTQKMKRACEDIGIICLDHIVIGKYQYYSFREETDVL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=32190 GALLO_RS05335 WP_012961923.1 1065416..1066096(+) (radC) [Streptococcus gallolyticus UCN34]
ATGTATGCAATTGAAATGAAAGCAGATGCCATGTTGCCACGAGAACGCTTGAGAGATTTGGGAGCAGAGCACCTTAGCAA
TCAAGAATTATTATCCATTTTATTACGAACAGGAACAAAAACAACCCCAGTTTTGGAAGTTGCCAATCAAATCTTGAAAA
ATTTAGATAGCCTAGCTGATTTTCAACACCTATCCCTGCAAGAATTGCAACAAATCAATGGTATTGGTTATGTTAAATCA
ATTGAAATCAAAGCAATGATTGAACTAGCAAAGCGTATTAGCAAGGCTGAATATGTCCAAAAAGAACGCATTATGAGCAG
TGAACGCCTAGCACGTAAAATGATGTTAGAATTGAGCGACCAAAAACAAGAGCACTTGGTGGCTATTTATCTGGATACGC
AAAATCGAATTATTGAACAACGAACAATTTTTATCGGTTCTGTTCGCCGTTCGATTGCTGAACCACGTGAAATTCTCTAT
TATGCATGCAAAAATATGGCAACATCAGTTATTATTGTCCATAATCATCCGTCAGGCTCCCCAGAGCCAAGCGAGAACGA
CCTGCAATTTACCCAAAAAATGAAACGCGCTTGTGAAGATATTGGCATTATTTGCCTTGACCATATCGTCATTGGAAAAT
ACCAATATTACAGCTTCCGAGAAGAAACAGATGTTTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I7FSC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

60.177

100

0.602
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

46.19

92.92

0.429