Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EBA31_RS23375 Genome accession   NZ_CP033162
Coordinates   4869900..4870436 (-) Length   178 a.a.
NCBI ID   WP_020837150.1    Uniprot ID   -
Organism   Serratia sp. P2ACOL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4864900..4875436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA31_RS23350 (EBA31_23380) - 4866372..4866779 (-) 408 WP_020837145.1 VOC family protein -
  EBA31_RS23355 (EBA31_23385) - 4866827..4867495 (-) 669 WP_020837146.1 glutathione S-transferase family protein -
  EBA31_RS23360 (EBA31_23390) - 4867727..4867987 (+) 261 WP_020837147.1 YdgH/BhsA/McbA-like domain containing protein -
  EBA31_RS23365 (EBA31_23395) - 4868044..4868961 (-) 918 WP_122080330.1 LysR family transcriptional regulator -
  EBA31_RS23370 (EBA31_23400) - 4869090..4869839 (+) 750 WP_046372533.1 3-oxoacyl-ACP reductase family protein -
  EBA31_RS23375 (EBA31_23405) ssb 4869900..4870436 (-) 537 WP_020837150.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EBA31_RS23380 (EBA31_23410) uvrA 4870714..4873545 (+) 2832 WP_020837151.1 excinuclease ABC subunit UvrA -
  EBA31_RS23385 (EBA31_23415) - 4873770..4874822 (+) 1053 WP_020837152.1 NAD(P)-dependent alcohol dehydrogenase -
  EBA31_RS23390 (EBA31_23420) maa 4874857..4875414 (-) 558 WP_020837153.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18746.73 Da        Isoelectric Point: 5.2456

>NTDB_id=321893 EBA31_RS23375 WP_020837150.1 4869900..4870436(-) (ssb) [Serratia sp. P2ACOL2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQASGGQGGWGQPQQPQGGNQFSGGQQARPAQNNA
PAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=321893 EBA31_RS23375 WP_020837150.1 4869900..4870436(-) (ssb) [Serratia sp. P2ACOL2]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGTGCAGTGGCCAACATTACCCTGGCAACCTCCGAAAGCTGGCGTGACAAGGCGACTGGCGAGCAGAAAGAAAAGACCG
AGTGGCACCGTGTCGTGCTGTTCGGCAAGCTGGCTGAAGTGGCGGGCGAATATCTGCGTAAAGGTTCCCAGGTGTACATC
GAGGGCGCGCTGCAGACTCGCAAATGGACCGATCAGGCCGGCGTAGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGTGGCGCACCGGCAGGCGGTGGTCAGGCTTCCGGCGGCCAGGGCG
GTTGGGGTCAACCTCAGCAGCCACAAGGCGGCAACCAGTTCAGCGGTGGCCAGCAGGCGCGCCCGGCGCAGAACAACGCA
CCGGCAGCCAGCAGCAATGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.584
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.478
  ssb Neisseria meningitidis MC58

45.213

100

0.478

Multiple sequence alignment