Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   D0856_RS08755 Genome accession   NZ_CP033144
Coordinates   1774465..1775052 (-) Length   195 a.a.
NCBI ID   WP_009705834.1    Uniprot ID   A0AAP9KAC0
Organism   Vibrio owensii strain V180403     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769465..1780052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS08735 (D0856_08735) - 1769616..1770878 (-) 1263 WP_122067731.1 DUF945 family protein -
  D0856_RS08740 (D0856_08740) - 1771064..1773004 (+) 1941 WP_041055388.1 ATP-binding protein -
  D0856_RS08745 (D0856_08745) - 1773001..1773498 (+) 498 WP_122067732.1 response regulator -
  D0856_RS08750 (D0856_08750) - 1773705..1774253 (+) 549 WP_005442235.1 hypothetical protein -
  D0856_RS08755 (D0856_08755) tfoX 1774465..1775052 (-) 588 WP_009705834.1 TfoX/Sxy family DNA transformation protein Regulator
  D0856_RS08765 (D0856_08765) - 1775423..1776343 (+) 921 WP_009705833.1 HDOD domain-containing protein -
  D0856_RS08770 (D0856_08770) - 1776447..1777352 (+) 906 WP_122067733.1 lysine exporter LysO family protein -
  D0856_RS08775 (D0856_08775) - 1777561..1778073 (+) 513 WP_122067734.1 hypothetical protein -
  D0856_RS08780 (D0856_08780) panP 1778195..1779841 (+) 1647 WP_009705831.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22398.56 Da        Isoelectric Point: 5.3762

>NTDB_id=321825 D0856_RS08755 WP_009705834.1 1774465..1775052(-) (tfoX) [Vibrio owensii strain V180403]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDDEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSSFDGLDELLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=321825 D0856_RS08755 WP_009705834.1 1774465..1775052(-) (tfoX) [Vibrio owensii strain V180403]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGTGGTAT
TGGTTTATTCAGCAATGACGCAATGTTCGCGTTGGTAAGTAACGACTGTTGTTATTTACGCGGCGGAAATGGGTTGGATG
ATGAGTTTACTCAACTAAACTGCGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTAAACTATTACGACGTA
ACAGACCTGTTTGATTCAAGCTTTGATGGGCTAGACGAACTGTTACAAAAATCAATTGAATGTTCTATTAAGGAACGCAA
ATACCAAAAGTCTTCCGCCAGTAGACGTTTGCGTGATCTGCCAAATATGCAGTTAACGCTCGAACGCATGGTAAAGAAAG
CCGGCATTGATGATGTCGACACATTTTTAGAACTTGGACCGGTAGAAGTGTTCAACAAAGTCAGAGTCGCTTACGGTAGT
GACGTTGATGTGAAACTTCTATGGAAATTTGCTGGTGCGATCGATGGTATCCACTGGAAACTAATCCAAGAGCCACGCAA
AAAGCAATTGCTAGCGATGTGCGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

97.436

100

0.974
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574

Multiple sequence alignment