Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0871_RS02350 Genome accession   NZ_CP033141
Coordinates   451706..452233 (+) Length   175 a.a.
NCBI ID   WP_025592225.1    Uniprot ID   A0A7Y0XCG9
Organism   Vibrio parahaemolyticus strain 160807     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 446706..457233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS02340 (D0871_02340) galU 449653..450525 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D0871_RS02345 (D0871_02345) qstR 450783..451427 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  D0871_RS02350 (D0871_02350) ssb 451706..452233 (+) 528 WP_025592225.1 single-stranded DNA-binding protein Machinery gene
  D0871_RS02355 (D0871_02355) csrD 452474..454483 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  D0871_RS02360 (D0871_02360) - 454495..455940 (+) 1446 WP_023624227.1 hypothetical protein -
  D0871_RS02365 (D0871_02365) gspM 455937..456587 (+) 651 WP_069514803.1 type II secretion system protein GspM -
  D0871_RS02370 (D0871_02370) - 456580..456909 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19435.49 Da        Isoelectric Point: 4.9269

>NTDB_id=321777 D0871_RS02350 WP_025592225.1 451706..452233(+) (ssb) [Vibrio parahaemolyticus strain 160807]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=321777 D0871_RS02350 WP_025592225.1 451706..452233(+) (ssb) [Vibrio parahaemolyticus strain 160807]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0XCG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.829
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.617
  ssb Neisseria meningitidis MC58

48.023

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.486

Multiple sequence alignment