Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D0812_RS01960 | Genome accession | NZ_CP033137 |
| Coordinates | 402064..402603 (+) | Length | 179 a.a. |
| NCBI ID | WP_005438106.1 | Uniprot ID | A0A0C1VQJ6 |
| Organism | Vibrio owensii strain 1700302 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 397064..407603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0812_RS01945 (D0812_01945) | uvrA | 397130..399952 (-) | 2823 | WP_054824617.1 | excinuclease ABC subunit UvrA | - |
| D0812_RS01950 (D0812_01950) | galU | 400091..400963 (-) | 873 | WP_038864585.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| D0812_RS01955 (D0812_01955) | qstR | 401126..401770 (-) | 645 | WP_005438104.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| D0812_RS01960 (D0812_01960) | ssb | 402064..402603 (+) | 540 | WP_005438106.1 | single-stranded DNA-binding protein | Machinery gene |
| D0812_RS01965 (D0812_01965) | csrD | 402851..404860 (+) | 2010 | WP_020195913.1 | RNase E specificity factor CsrD | - |
| D0812_RS01970 (D0812_01970) | - | 404872..406320 (+) | 1449 | WP_041060962.1 | MSHA biogenesis protein MshI | - |
| D0812_RS01975 (D0812_01975) | gspM | 406317..406967 (+) | 651 | WP_009707663.1 | type II secretion system protein GspM | - |
| D0812_RS01980 (D0812_01980) | - | 406960..407289 (+) | 330 | WP_009707662.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19888.94 Da Isoelectric Point: 4.9269
>NTDB_id=321730 D0812_RS01960 WP_005438106.1 402064..402603(+) (ssb) [Vibrio owensii strain 1700302]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=321730 D0812_RS01960 WP_005438106.1 402064..402603(+) (ssb) [Vibrio owensii strain 1700302]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80 |
100 |
0.804 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.581 |
| ssb | Neisseria meningitidis MC58 |
46.927 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.927 |
100 |
0.469 |