Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   GALLO_RS03265 Genome accession   NC_013798
Coordinates   614924..615574 (-) Length   216 a.a.
NCBI ID   WP_012961614.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609924..620574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS03240 (GALLO_0586) trpC 610116..610883 (+) 768 WP_012961609.1 indole-3-glycerol phosphate synthase TrpC -
  GALLO_RS03245 (GALLO_0587) - 610870..611451 (+) 582 WP_012961610.1 phosphoribosylanthranilate isomerase -
  GALLO_RS03250 (GALLO_0588) trpB 611448..612650 (+) 1203 WP_012961611.1 tryptophan synthase subunit beta -
  GALLO_RS03255 (GALLO_0589) trpA 612654..613436 (+) 783 WP_012961612.1 tryptophan synthase subunit alpha -
  GALLO_RS03260 (GALLO_0590) - 613501..614841 (-) 1341 WP_012961613.1 Nramp family divalent metal transporter -
  GALLO_RS03265 (GALLO_0591) cclA/cilC 614924..615574 (-) 651 WP_012961614.1 prepilin peptidase Machinery gene
  GALLO_RS03270 (GALLO_0592) - 615704..616234 (+) 531 WP_009853672.1 Dps family protein -
  GALLO_RS03275 (GALLO_0593) - 616405..616614 (+) 210 WP_012961615.1 YqgQ family protein -
  GALLO_RS03280 (GALLO_0594) - 616607..617575 (+) 969 WP_009853682.1 ROK family glucokinase -
  GALLO_RS03285 (GALLO_0595) - 617586..617966 (+) 381 WP_003063685.1 rhodanese-like domain-containing protein -
  GALLO_RS03290 (GALLO_0596) - 617981..619027 (+) 1047 WP_012961616.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24874.82 Da        Isoelectric Point: 6.4627

>NTDB_id=32170 GALLO_RS03265 WP_012961614.1 614924..615574(-) (cclA/cilC) [Streptococcus gallolyticus UCN34]
MDILLFFFLGASIASFLSLIVDRFPEKSIIFPASHCDSCGKQLAVRDLIPIFSQLINHSRCRFCHTKIPFWYGLLELYFG
VIVVLYYCALLSLDQVFILFFSTTLSFYDLKRQEFPLLVWLLPSIFLLFVTPINALAIILLAFGIMAELIDLKIGSGDFF
YLASLSLLLDLQTILWIIDLGSLSGIIYYFFQTNKRIPFVPFLFLGYLILFIFNHT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=32170 GALLO_RS03265 WP_012961614.1 614924..615574(-) (cclA/cilC) [Streptococcus gallolyticus UCN34]
ATGGACATTTTATTATTCTTTTTTCTAGGGGCTTCTATTGCTTCTTTTCTTAGTTTAATCGTTGATCGATTTCCCGAAAA
ATCAATCATTTTTCCTGCCAGTCATTGTGATTCTTGTGGAAAACAACTTGCCGTTCGTGATTTGATTCCCATTTTTTCTC
AACTGATAAATCATTCACGTTGTCGTTTTTGCCACACCAAAATTCCTTTCTGGTATGGGCTGTTAGAGCTTTATTTTGGG
GTCATTGTCGTACTTTACTATTGCGCACTTCTCTCACTCGACCAAGTTTTTATCTTGTTTTTTAGCACAACTCTTAGTTT
TTATGACTTGAAACGTCAAGAGTTTCCATTGTTGGTTTGGCTCCTTCCAAGTATTTTTTTGCTTTTTGTCACGCCGATTA
ATGCGCTAGCTATTATTCTTTTGGCTTTTGGGATAATGGCAGAGCTGATTGATTTGAAAATCGGTAGCGGTGATTTTTTC
TACCTTGCCAGCTTGAGTCTGCTTCTTGACCTTCAAACCATTTTATGGATTATCGATCTTGGCTCTCTTTCAGGTATTAT
TTACTACTTTTTCCAGACAAATAAACGGATTCCCTTTGTGCCATTTTTATTTTTAGGATATCTAATTTTGTTTATTTTTA
ACCACACTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

46.117

95.37

0.44
  cclA/cilC Streptococcus pneumoniae TIGR4

45.545

93.519

0.426
  cclA/cilC Streptococcus pneumoniae Rx1

44.66

95.37

0.426
  cclA/cilC Streptococcus pneumoniae D39

44.66

95.37

0.426
  cclA/cilC Streptococcus pneumoniae R6

44.66

95.37

0.426
  cclA/cilC Streptococcus mitis NCTC 12261

43.689

95.37

0.417

Multiple sequence alignment