Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDG68_RS20910 Genome accession   NZ_CP033133
Coordinates   3754951..3755517 (-) Length   188 a.a.
NCBI ID   WP_087553936.1    Uniprot ID   A0A3G2T7H0
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3745962..3756581 3754951..3755517 within 0
IS/Tn 3753875..3754609 3754951..3755517 flank 342


Gene organization within MGE regions


Location: 3745962..3756581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS20875 (CDG68_20880) - 3745962..3746405 (-) 444 WP_087553933.1 hypothetical protein -
  CDG68_RS22830 - 3746838..3747224 (+) 387 WP_228255411.1 hypothetical protein -
  CDG68_RS20880 (CDG68_20885) - 3747225..3748088 (+) 864 WP_228255412.1 hypothetical protein -
  CDG68_RS20885 (CDG68_20890) - 3748151..3750883 (+) 2733 WP_087553934.1 type VI secretion system Vgr family protein -
  CDG68_RS20890 (CDG68_20895) - 3750892..3751932 (+) 1041 WP_228255413.1 T6SS immunity protein Tli4 family protein -
  CDG68_RS20895 (CDG68_20900) - 3751934..3753691 (+) 1758 WP_087553935.1 esterase/lipase family protein -
  CDG68_RS20900 (CDG68_20905) - 3753875..3754551 (+) 677 Protein_3490 IS1595 family transposase -
  CDG68_RS23020 (CDG68_20910) - 3754655..3754753 (+) 99 Protein_3491 transposase -
  CDG68_RS20910 (CDG68_20915) ssb 3754951..3755517 (-) 567 WP_087553936.1 single-stranded DNA-binding protein Machinery gene
  CDG68_RS20915 (CDG68_20920) - 3755806..3756288 (-) 483 WP_032036273.1 hypothetical protein -
  CDG68_RS20920 (CDG68_20925) - 3756363..3756581 (+) 219 WP_002059957.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20595.17 Da        Isoelectric Point: 5.2666

>NTDB_id=321673 CDG68_RS20910 WP_087553936.1 3754951..3755517(-) (ssb) [Acinetobacter wuhouensis strain WCHAW010062]
MSNVILVGTLGRDPETKIFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLR
TRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGGEGSENGGYNQPRFNNNNQGNQGGYGNQGGNQGGYGNNNQGGYGNAGN
NVNQGFQSPKPAPAPAAAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=321673 CDG68_RS20910 WP_087553936.1 3754951..3755517(-) (ssb) [Acinetobacter wuhouensis strain WCHAW010062]
ATGAGCAATGTCATCTTAGTTGGTACTTTAGGTCGTGATCCTGAAACTAAAATTTTCCCTAATGGGGGCTCTCTCACTCA
ATTTTCAATTGCAACAAGTGAATCTTGGACAGATAAAAATACGGGCGAAAGAAAAGAACAAACAGAATGGCACCGTATTG
TGTTACACAACCGTTTAGGTGAAATTGCACAGCAATATCTACGTAAAGGCTCGAAAGTGTATATCGAAGGTTCTTTGCGT
ACTCGCCAATGGACTGACCAAAATGGTCAAGAGCGTTACACCACAGAAATTCGTGGTGAACAAATGCAAATGTTAGACTC
GAACCGTCAGCAAGGTGGCGAGGGTAGTGAAAACGGTGGTTATAACCAACCGCGTTTCAACAACAATAATCAAGGCAACC
AAGGCGGTTATGGCAATCAGGGTGGAAACCAAGGTGGCTATGGAAATAACAACCAAGGTGGTTATGGCAATGCTGGAAAC
AATGTCAATCAAGGTTTCCAATCGCCTAAACCAGCGCCTGCTCCAGCGGCAGCACCAGCAGATTTAGATGATGACCTTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2T7H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

42.857

100

0.447
  ssb Neisseria meningitidis MC58

38.095

100

0.383
  ssb Neisseria gonorrhoeae MS11

38.095

100

0.383

Multiple sequence alignment