Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CDG68_RS04690 Genome accession   NZ_CP033133
Coordinates   385964..386695 (+) Length   243 a.a.
NCBI ID   WP_087552977.1    Uniprot ID   A0A3G2SZ88
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380964..391695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS04675 (CDG68_04680) ponA 381554..384109 (-) 2556 WP_087552974.1 penicillin-binding protein PBP1a -
  CDG68_RS04680 (CDG68_04685) comM 384274..385332 (+) 1059 WP_087552975.1 pilus assembly protein PilM Machinery gene
  CDG68_RS04685 (CDG68_04690) pilN 385332..385967 (+) 636 WP_087552976.1 PilN domain-containing protein Machinery gene
  CDG68_RS04690 (CDG68_04695) pilO 385964..386695 (+) 732 WP_087552977.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG68_RS04695 (CDG68_04700) pilP 386692..387222 (+) 531 WP_087552978.1 pilus assembly protein PilP Machinery gene
  CDG68_RS04700 (CDG68_04705) pilQ 387288..389420 (+) 2133 WP_410169814.1 type IV pilus secretin PilQ Machinery gene
  CDG68_RS04705 (CDG68_04710) aroK 389457..389999 (+) 543 WP_068975062.1 shikimate kinase AroK -
  CDG68_RS04710 (CDG68_04715) aroB 390031..391110 (+) 1080 WP_087552980.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27450.08 Da        Isoelectric Point: 4.8293

>NTDB_id=321643 CDG68_RS04690 WP_087552977.1 385964..386695(+) (pilO) [Acinetobacter wuhouensis strain WCHAW010062]
MSREDFEQLDSSVDAPKKNKMTVEKFFQQFNTLDMNNYGSWPWSVKITCWLFLFFVVCAIGYFLAIKPKLEAIDQARTVE
QNLLNEFKEKDSKLRNLQQYQMQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIRLEQEVKQEFFIEQP
ISIDATGDYHSFGSFVSSIAALPRIVTLHDFTISGVPSPDKKSDVPVIDYTIKAKTYRYVGADGQGAGNTNASATPPQGG
APQ

Nucleotide


Download         Length: 732 bp        

>NTDB_id=321643 CDG68_RS04690 WP_087552977.1 385964..386695(+) (pilO) [Acinetobacter wuhouensis strain WCHAW010062]
ATGAGTCGTGAAGATTTTGAGCAATTAGATTCATCTGTTGATGCTCCAAAGAAAAATAAAATGACCGTTGAGAAATTTTT
TCAACAGTTTAATACGCTGGATATGAATAATTATGGTAGTTGGCCGTGGTCGGTTAAGATTACTTGCTGGTTATTCTTAT
TTTTTGTGGTCTGTGCAATTGGTTACTTTTTAGCGATTAAGCCGAAACTTGAAGCGATTGATCAGGCACGTACGGTTGAG
CAAAATTTACTGAATGAATTTAAAGAAAAAGATTCTAAATTACGCAATTTGCAACAATATCAAATGCAACTGCAACAAAT
GGAAGCGAATTTTAATCAGCAATTAGAACAATTGCCGAAAGAGACAGAAATTCCAAGTCTAGTTGAAGATATTAACGTGA
CTGGTGTGAGTTCAGGTTTGAAATTTAAAAATATCAGATTGGAACAAGAAGTTAAGCAAGAATTCTTCATTGAACAGCCA
ATTTCGATAGATGCCACTGGGGATTATCATTCATTTGGTAGTTTTGTAAGTAGTATTGCTGCTTTGCCACGTATTGTAAC
TTTACATGATTTCACAATTTCAGGTGTACCAAGCCCAGATAAAAAATCAGATGTGCCTGTTATAGATTATACAATTAAAG
CAAAAACTTACCGTTATGTTGGTGCTGATGGACAAGGGGCAGGTAATACCAATGCCTCAGCGACACCACCGCAAGGAGGG
GCGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2SZ88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

73.874

91.358

0.675
  comO Acinetobacter baylyi ADP1

67.213

100

0.675

Multiple sequence alignment