Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EAO82_RS17835 | Genome accession | NZ_CP033116 |
| Coordinates | 3884581..3885453 (+) | Length | 290 a.a. |
| NCBI ID | WP_096345138.1 | Uniprot ID | A0AA91U4Y3 |
| Organism | Halopseudomonas pelagia strain Kongs-67 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3879581..3890453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAO82_RS17815 (EAO82_17920) | - | 3880187..3880657 (-) | 471 | WP_185153062.1 | pilin | - |
| EAO82_RS17820 (EAO82_17925) | - | 3880873..3881328 (-) | 456 | WP_096345135.1 | pilin | - |
| EAO82_RS17825 (EAO82_17930) | pilB | 3881608..3883311 (+) | 1704 | WP_096345136.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EAO82_RS17830 (EAO82_17935) | pilC | 3883315..3884577 (+) | 1263 | WP_096345137.1 | type II secretion system F family protein | Machinery gene |
| EAO82_RS17835 (EAO82_17940) | pilD | 3884581..3885453 (+) | 873 | WP_096345138.1 | prepilin peptidase | Machinery gene |
| EAO82_RS17840 (EAO82_17945) | - | 3885514..3885828 (+) | 315 | WP_096345139.1 | transcriptional regulator | - |
| EAO82_RS17845 (EAO82_17950) | - | 3885821..3886099 (+) | 279 | WP_096345140.1 | helix-turn-helix domain-containing protein | - |
| EAO82_RS17850 (EAO82_17955) | coaE | 3886133..3886759 (+) | 627 | WP_096345141.1 | dephospho-CoA kinase | - |
| EAO82_RS17855 (EAO82_17960) | yacG | 3886756..3886944 (+) | 189 | WP_096345142.1 | DNA gyrase inhibitor YacG | - |
| EAO82_RS17860 (EAO82_17965) | - | 3886957..3887976 (+) | 1020 | WP_096345143.1 | Nudix family hydrolase | - |
| EAO82_RS17865 (EAO82_17970) | ispH | 3887994..3888941 (-) | 948 | WP_096345144.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| EAO82_RS17870 (EAO82_17975) | fkpB | 3889470..3889907 (-) | 438 | WP_096345145.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32019.02 Da Isoelectric Point: 6.9481
>NTDB_id=321631 EAO82_RS17835 WP_096345138.1 3884581..3885453(+) (pilD) [Halopseudomonas pelagia strain Kongs-67]
MSLPSYLASDELAFILIAGLLGLVVGSFLNVVIHRVPRMMERDWLRQAREMLEPDAEQPKEPTYNLILPHSHCPHCNTEI
KAWQNLPVLSYLLLRGRCGQCRARISPRYPLVELLTAVLSMTVAWQFGFGWAAGAMLVLTWGLISLSLIDADTQLLPDSI
VLPLLWLGLIINSFALMTDLNSALWGAVVGYLTLWLIFWAFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLV
GAILGVIILKTRGQSNATPLPFGPYLAIAGWIALIWGDTITGTYLHFAGF
MSLPSYLASDELAFILIAGLLGLVVGSFLNVVIHRVPRMMERDWLRQAREMLEPDAEQPKEPTYNLILPHSHCPHCNTEI
KAWQNLPVLSYLLLRGRCGQCRARISPRYPLVELLTAVLSMTVAWQFGFGWAAGAMLVLTWGLISLSLIDADTQLLPDSI
VLPLLWLGLIINSFALMTDLNSALWGAVVGYLTLWLIFWAFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLV
GAILGVIILKTRGQSNATPLPFGPYLAIAGWIALIWGDTITGTYLHFAGF
Nucleotide
Download Length: 873 bp
>NTDB_id=321631 EAO82_RS17835 WP_096345138.1 3884581..3885453(+) (pilD) [Halopseudomonas pelagia strain Kongs-67]
ATGAGTTTACCCTCCTATTTGGCCAGCGATGAGCTGGCCTTTATTTTGATCGCCGGCCTATTAGGCCTCGTTGTTGGTAG
CTTCCTCAACGTTGTCATCCATCGCGTCCCAAGAATGATGGAACGCGACTGGCTTAGGCAGGCGCGGGAAATGCTGGAGC
CTGATGCTGAACAACCGAAAGAACCGACCTACAACCTGATCCTACCTCACTCCCACTGCCCACACTGCAACACAGAAATC
AAAGCGTGGCAGAACCTTCCGGTCTTGAGCTATCTATTGCTGCGCGGGCGCTGTGGCCAGTGCAGGGCACGCATCAGCCC
GCGCTACCCACTAGTTGAATTGCTGACGGCCGTGCTGTCGATGACAGTGGCTTGGCAATTCGGTTTTGGTTGGGCGGCTG
GAGCCATGTTGGTGTTGACCTGGGGGCTAATCAGTTTAAGTCTGATTGATGCCGATACCCAGTTGCTGCCCGATTCGATA
GTGCTGCCGCTGCTCTGGCTTGGCCTGATCATCAACAGCTTTGCGCTTATGACTGACCTGAACTCGGCGCTCTGGGGCGC
GGTGGTGGGCTATCTGACCCTCTGGCTCATTTTCTGGGCATTCAAGCTGATTACGGGCAAGGAAGGCATGGGCTACGGCG
ATTTCAAATTGCTAGCTATGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGTTGACCATTTTGCTCTCTTCTCTGGTG
GGCGCGATTCTGGGCGTCATCATCCTGAAAACCCGTGGCCAGTCCAACGCCACTCCCCTGCCCTTCGGACCCTATCTGGC
AATCGCCGGGTGGATTGCATTGATCTGGGGTGACACAATTACCGGCACATACCTTCACTTCGCCGGATTCTGA
ATGAGTTTACCCTCCTATTTGGCCAGCGATGAGCTGGCCTTTATTTTGATCGCCGGCCTATTAGGCCTCGTTGTTGGTAG
CTTCCTCAACGTTGTCATCCATCGCGTCCCAAGAATGATGGAACGCGACTGGCTTAGGCAGGCGCGGGAAATGCTGGAGC
CTGATGCTGAACAACCGAAAGAACCGACCTACAACCTGATCCTACCTCACTCCCACTGCCCACACTGCAACACAGAAATC
AAAGCGTGGCAGAACCTTCCGGTCTTGAGCTATCTATTGCTGCGCGGGCGCTGTGGCCAGTGCAGGGCACGCATCAGCCC
GCGCTACCCACTAGTTGAATTGCTGACGGCCGTGCTGTCGATGACAGTGGCTTGGCAATTCGGTTTTGGTTGGGCGGCTG
GAGCCATGTTGGTGTTGACCTGGGGGCTAATCAGTTTAAGTCTGATTGATGCCGATACCCAGTTGCTGCCCGATTCGATA
GTGCTGCCGCTGCTCTGGCTTGGCCTGATCATCAACAGCTTTGCGCTTATGACTGACCTGAACTCGGCGCTCTGGGGCGC
GGTGGTGGGCTATCTGACCCTCTGGCTCATTTTCTGGGCATTCAAGCTGATTACGGGCAAGGAAGGCATGGGCTACGGCG
ATTTCAAATTGCTAGCTATGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGTTGACCATTTTGCTCTCTTCTCTGGTG
GGCGCGATTCTGGGCGTCATCATCCTGAAAACCCGTGGCCAGTCCAACGCCACTCCCCTGCCCTTCGGACCCTATCTGGC
AATCGCCGGGTGGATTGCATTGATCTGGGGTGACACAATTACCGGCACATACCTTCACTTCGCCGGATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter nosocomialis M2 |
51.601 |
96.897 |
0.5 |
| pilD | Acinetobacter baumannii D1279779 |
51.601 |
96.897 |
0.5 |
| pilD | Vibrio cholerae strain A1552 |
52.381 |
94.138 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
52.273 |
91.034 |
0.476 |
| pilD | Vibrio campbellii strain DS40M4 |
50.549 |
94.138 |
0.476 |