Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC7424_RS19495 Genome accession   NC_011729
Coordinates   4404545..4404922 (-) Length   125 a.a.
NCBI ID   WP_015955927.1    Uniprot ID   B7KKK9
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4399545..4409922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS19485 (PCC7424_3966) ppsA 4400141..4402522 (+) 2382 WP_015955925.1 phosphoenolpyruvate synthase -
  PCC7424_RS19490 (PCC7424_3967) - 4402729..4404396 (+) 1668 WP_083775383.1 ABC transporter ATP-binding protein -
  PCC7424_RS19495 (PCC7424_3968) pilH 4404545..4404922 (-) 378 WP_015955927.1 response regulator Machinery gene
  PCC7424_RS19500 (PCC7424_3969) - 4405206..4406024 (-) 819 WP_015955928.1 DUF1206 domain-containing protein -
  PCC7424_RS19505 (PCC7424_3970) - 4406592..4407191 (-) 600 WP_015955929.1 Crp/Fnr family transcriptional regulator -
  PCC7424_RS19510 (PCC7424_3971) - 4407358..4408599 (-) 1242 WP_015955930.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14345.67 Da        Isoelectric Point: 4.6952

>NTDB_id=32148 PCC7424_RS19495 WP_015955927.1 4404545..4404922(-) (pilH) [Gloeothece citriformis PCC 7424]
MITVLIVDDSASLRQILLELLEKRGINVLEAASGMEAQEVIQKQIPDLVITDLIMPQMNGYELCRWIKNNPNTQDVPVLI
CSTKSEEFDRYWGMKQGADAYITKPFDNAEMLQTIKFLLQNRRKS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=32148 PCC7424_RS19495 WP_015955927.1 4404545..4404922(-) (pilH) [Gloeothece citriformis PCC 7424]
ATGATTACAGTTCTTATCGTCGATGATAGTGCCAGCCTACGACAAATTCTGCTTGAACTCCTCGAAAAGCGAGGAATTAA
CGTACTAGAAGCAGCCAGTGGCATGGAGGCTCAGGAGGTAATTCAGAAACAAATTCCCGATTTAGTGATTACTGATTTAA
TTATGCCTCAGATGAACGGTTATGAATTGTGTCGCTGGATTAAAAATAATCCCAATACCCAGGATGTTCCTGTCTTAATT
TGTTCGACTAAAAGCGAAGAGTTTGATCGCTATTGGGGCATGAAACAAGGTGCAGATGCTTATATTACTAAACCTTTTGA
CAATGCCGAAATGCTGCAAACCATCAAATTTTTATTACAAAATCGTCGAAAAAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7KKK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.545

96.8

0.528
  micA Streptococcus pneumoniae Cp1015

39.167

96

0.376
  vicR Streptococcus mutans UA159

37.5

96

0.36

Multiple sequence alignment