Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D8767_RS26530 Genome accession   NZ_CP033104
Coordinates   5617641..5618186 (-) Length   181 a.a.
NCBI ID   WP_016715325.1    Uniprot ID   A0AAP7KGL0
Organism   Pseudomonas sp. LTGT-11-2Z     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5609378..5617501 5617641..5618186 flank 140


Gene organization within MGE regions


Location: 5609378..5618186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8767_RS26500 (D8767_26500) - 5609735..5611912 (-) 2178 WP_121757520.1 ATP-dependent RecD-like DNA helicase -
  D8767_RS26505 (D8767_26505) - 5611909..5612346 (-) 438 WP_121757519.1 VPA1267 family protein -
  D8767_RS26510 (D8767_26510) - 5612346..5612762 (-) 417 WP_121757518.1 hypothetical protein -
  D8767_RS26515 (D8767_26515) - 5612762..5614759 (-) 1998 WP_122048462.1 integrase -
  D8767_RS26520 (D8767_26520) - 5614752..5616296 (-) 1545 WP_232860015.1 site-specific integrase -
  D8767_RS26525 (D8767_26525) - 5616299..5617429 (-) 1131 WP_232860014.1 site-specific integrase -
  D8767_RS26530 (D8767_26530) ssb 5617641..5618186 (-) 546 WP_016715325.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20146.24 Da        Isoelectric Point: 5.9286

>NTDB_id=321390 D8767_RS26530 WP_016715325.1 5617641..5618186(-) (ssb) [Pseudomonas sp. LTGT-11-2Z]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGDPYNQGGGNYNQGGQQQQYNQTPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=321390 D8767_RS26530 WP_016715325.1 5617641..5618186(-) (ssb) [Pseudomonas sp. LTGT-11-2Z]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTAGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAACTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACAACCAAG
GTGGTCAGCAGCAACAGTACAACCAGACCCCGCCGCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCGGCG
CCGCAGCAGCCAGCGCCACAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

49.735

100

0.519
  ssb Neisseria gonorrhoeae MS11

48.37

100

0.492
  ssb Neisseria meningitidis MC58

48.634

100

0.492

Multiple sequence alignment