Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EAH52_RS11705 Genome accession   NZ_CP033098
Coordinates   2388963..2389478 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus warneri strain SWO     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2376453..2391246 2388963..2389478 within 0


Gene organization within MGE regions


Location: 2376453..2391246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAH52_RS11610 - 2376453..2376938 (-) 486 WP_122135117.1 terminase small subunit -
  EAH52_RS11615 - 2376991..2377293 (-) 303 WP_002467101.1 hypothetical protein -
  EAH52_RS11620 - 2377286..2377882 (-) 597 WP_002467104.1 hypothetical protein -
  EAH52_RS11625 - 2377901..2378428 (-) 528 WP_031464129.1 hypothetical protein -
  EAH52_RS11630 - 2378443..2378787 (-) 345 WP_002467111.1 hypothetical protein -
  EAH52_RS11635 - 2379073..2379714 (-) 642 WP_002467115.1 pathogenicity island protein -
  EAH52_RS11640 - 2379716..2380093 (-) 378 WP_002467110.1 hypothetical protein -
  EAH52_RS11645 - 2380086..2380439 (-) 354 WP_002467109.1 hypothetical protein -
  EAH52_RS11650 - 2380682..2382049 (-) 1368 WP_002467121.1 phage/plasmid primase, P4 family -
  EAH52_RS11655 - 2382061..2382930 (-) 870 WP_002467116.1 primase alpha helix C-terminal domain-containing protein -
  EAH52_RS11660 - 2383019..2383357 (-) 339 WP_002467122.1 hypothetical protein -
  EAH52_RS11665 - 2383359..2383565 (-) 207 WP_002467105.1 hypothetical protein -
  EAH52_RS13120 - 2383591..2383722 (-) 132 WP_002467113.1 hypothetical protein -
  EAH52_RS11670 - 2383735..2384007 (-) 273 WP_046464477.1 hypothetical protein -
  EAH52_RS11675 - 2384046..2384246 (-) 201 WP_002467106.1 hypothetical protein -
  EAH52_RS11680 - 2384352..2385272 (+) 921 WP_050969315.1 helix-turn-helix transcriptional regulator -
  EAH52_RS11685 - 2385640..2385873 (+) 234 WP_002466547.1 hypothetical protein -
  EAH52_RS11690 - 2385896..2387083 (+) 1188 WP_122135118.1 hypothetical protein -
  EAH52_RS11695 - 2387310..2388530 (+) 1221 WP_002466541.1 site-specific integrase -
  EAH52_RS11700 rpsR 2388676..2388918 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  EAH52_RS11705 ssbA 2388963..2389478 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  EAH52_RS11710 rpsF 2389500..2389796 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  EAH52_RS11715 - 2390172..2390993 (+) 822 WP_002466546.1 GH25 family lysozyme -
  EAH52_RS11720 - 2391055..2391246 (+) 192 WP_002451523.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=321347 EAH52_RS11705 WP_002466536.1 2388963..2389478(-) (ssbA) [Staphylococcus warneri strain SWO]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=321347 EAH52_RS11705 WP_002466536.1 2388963..2389478(-) (ssbA) [Staphylococcus warneri strain SWO]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment