Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D9V35_RS03570 Genome accession   NZ_CP033087
Coordinates   778382..778891 (+) Length   169 a.a.
NCBI ID   WP_122123400.1    Uniprot ID   -
Organism   Commensalibacter melissae strain AMU001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 773382..783891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V35_RS03560 (D9V35_03560) - 774391..775329 (-) 939 WP_122123398.1 GlxA family transcriptional regulator -
  D9V35_RS03565 (D9V35_03565) uvrA 775376..778240 (-) 2865 WP_122123399.1 excinuclease ABC subunit UvrA -
  D9V35_RS03570 (D9V35_03570) ssb 778382..778891 (+) 510 WP_122123400.1 single-stranded DNA-binding protein Machinery gene
  D9V35_RS03575 (D9V35_03575) gyrA 779336..782059 (+) 2724 WP_408869341.1 DNA gyrase subunit A -
  D9V35_RS03580 (D9V35_03580) coaD 782063..782584 (+) 522 WP_110438841.1 pantetheine-phosphate adenylyltransferase -
  D9V35_RS03585 (D9V35_03585) - 782623..783108 (+) 486 WP_230873415.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18764.79 Da        Isoelectric Point: 5.3385

>NTDB_id=321243 D9V35_RS03570 WP_122123400.1 778382..778891(+) (ssb) [Commensalibacter melissae strain AMU001]
MAGSVNKVILVGNLGRDPEVRSAQTGAKIVTLAIATSDTWNDRQTGERKDLTEWHRVVIFNERLADVAEKYLRKGRKVFI
EGILRTRKWTDQQGVERYSTDVVVDRFRGELVLLDSARSGGDSMDNYSGSSFTPPAVRPASNASSDNRSNSSWDASMPGN
NDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=321243 D9V35_RS03570 WP_122123400.1 778382..778891(+) (ssb) [Commensalibacter melissae strain AMU001]
ATGGCAGGAAGTGTTAATAAGGTAATTTTGGTTGGAAATCTTGGACGAGATCCTGAAGTTAGAAGTGCACAAACAGGCGC
CAAGATAGTTACTCTCGCAATTGCCACCAGTGATACCTGGAACGATCGTCAGACTGGTGAACGTAAGGATCTGACAGAAT
GGCATAGAGTGGTAATTTTTAATGAGCGTCTTGCTGATGTCGCAGAAAAATATTTACGTAAGGGTCGCAAGGTTTTTATA
GAGGGAATATTGAGAACCCGGAAATGGACTGATCAGCAAGGTGTTGAACGGTATAGCACAGATGTGGTTGTTGACCGATT
TAGAGGAGAACTGGTTTTATTGGATAGCGCGCGAAGTGGTGGAGATTCAATGGATAATTATTCGGGATCTTCATTTACAC
CACCTGCGGTCCGTCCAGCCAGTAATGCATCATCTGATAATAGATCCAATTCCAGTTGGGATGCTTCCATGCCTGGTAAT
AATGATTTGGATGATGAAATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.491
  ssb Vibrio cholerae strain A1552

45.455

100

0.473
  ssb Neisseria meningitidis MC58

37.288

100

0.391
  ssb Neisseria gonorrhoeae MS11

37.288

100

0.391

Multiple sequence alignment