Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EAG14_RS00485 Genome accession   NZ_CP033069
Coordinates   110096..110656 (+) Length   186 a.a.
NCBI ID   WP_099742431.1    Uniprot ID   A0A2G6YC20
Organism   Acidovorax sp. 1608163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 105096..115656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAG14_RS00470 (EAG14_00470) - 106527..107588 (+) 1062 WP_121727727.1 helix-turn-helix domain-containing protein -
  EAG14_RS00475 (EAG14_00475) - 107881..108621 (+) 741 WP_162995865.1 choice-of-anchor U domain-containing protein -
  EAG14_RS00480 (EAG14_00480) - 108794..109993 (+) 1200 WP_121727729.1 MFS transporter -
  EAG14_RS00485 (EAG14_00485) ssb 110096..110656 (+) 561 WP_099742431.1 single-stranded DNA-binding protein Machinery gene
  EAG14_RS00490 (EAG14_00490) - 110794..111942 (+) 1149 WP_121727730.1 VWA domain-containing protein -
  EAG14_RS00495 (EAG14_00495) - 111967..114099 (+) 2133 WP_121727731.1 SWIM zinc finger family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19855.09 Da        Isoelectric Point: 5.9505

>NTDB_id=321141 EAG14_RS00485 WP_099742431.1 110096..110656(+) (ssb) [Acidovorax sp. 1608163]
MASINKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQTGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQAGVEKYSTEIRADQMQMLGGRQGMGGQGGGQQGGGYDDGGYGGGGDQGGGYDQAPRRAAPAPRPMAAPAP
RPAPAPVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=321141 EAG14_RS00485 WP_099742431.1 110096..110656(+) (ssb) [Acidovorax sp. 1608163]
ATGGCATCCATCAACAAAGTCATCATCGTCGGAAACCTGGGCCGTGACCCTGAAATGCGCACCTTCCCCAGTGGCGATCA
GGTGGCCAACGTGACCATTGCCACCACCGACAAGTGGAAAGACAAGCAGACCGGCGAAATGAAAGAGGCCACCGAGTGGC
ACCGCGTGGTCTTTAACGGCCGTCTGGCTGAAATCGTAGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCGGCGTTGAAAAGTACAGCACCGAAATCCGCGCCGACCAGATGCAAAT
GCTGGGCGGCCGCCAAGGCATGGGCGGCCAAGGTGGCGGCCAGCAAGGCGGTGGCTATGACGACGGCGGCTACGGCGGTG
GCGGCGACCAAGGTGGCGGCTACGACCAAGCCCCCCGCCGCGCAGCGCCAGCGCCACGCCCCATGGCCGCACCGGCCCCG
CGCCCCGCGCCAGCACCCGTGGCGCAGCCCCCCCGCGCGGCTTCGGGCTTTGATGACATGGACGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G6YC20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.295

100

0.532
  ssb Glaesserella parasuis strain SC1401

51.613

100

0.516
  ssb Neisseria gonorrhoeae MS11

44.324

99.462

0.441
  ssb Neisseria meningitidis MC58

42.391

98.925

0.419

Multiple sequence alignment