Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | PCC8801_RS03550 | Genome accession | NC_011726 |
| Coordinates | 747839..748204 (-) | Length | 121 a.a. |
| NCBI ID | WP_012594082.1 | Uniprot ID | B7JXP9 |
| Organism | Rippkaea orientalis PCC 8801 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 742839..753204
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCC8801_RS03540 (PCC8801_0720) | pilJ | 744533..747175 (-) | 2643 | WP_012594080.1 | methyl-accepting chemotaxis protein | Machinery gene |
| PCC8801_RS03545 (PCC8801_0721) | - | 747261..747791 (-) | 531 | WP_012594081.1 | chemotaxis protein CheW | - |
| PCC8801_RS03550 (PCC8801_0722) | pilH | 747839..748204 (-) | 366 | WP_012594082.1 | response regulator | Machinery gene |
| PCC8801_RS03555 (PCC8801_0723) | - | 748657..749874 (-) | 1218 | WP_012594083.1 | response regulator | - |
| PCC8801_RS03560 (PCC8801_0724) | hmpF | 750184..751791 (+) | 1608 | WP_012594084.1 | pilus motility taxis protein HmpF | - |
| PCC8801_RS03565 (PCC8801_0725) | - | 751825..752034 (+) | 210 | WP_012594085.1 | hypothetical protein | - |
| PCC8801_RS03570 (PCC8801_0726) | - | 752042..752440 (-) | 399 | WP_012594086.1 | helix-turn-helix domain-containing protein | - |
| PCC8801_RS03575 (PCC8801_0727) | - | 752530..752811 (-) | 282 | WP_012594087.1 | type II toxin-antitoxin system HigB family toxin | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13651.02 Da Isoelectric Point: 5.2868
>NTDB_id=32108 PCC8801_RS03550 WP_012594082.1 747839..748204(-) (pilH) [Rippkaea orientalis PCC 8801]
MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEKFSPDVIVLDIVMPGMNGYEVCRRLKSDPKLKNVPVVI
CSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLLRK
MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEKFSPDVIVLDIVMPGMNGYEVCRRLKSDPKLKNVPVVI
CSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLLRK
Nucleotide
Download Length: 366 bp
>NTDB_id=32108 PCC8801_RS03550 WP_012594082.1 747839..748204(-) (pilH) [Rippkaea orientalis PCC 8801]
ATGAGAGCCGTTTTATTAGTAGAAGACAGTCCCGTTCAACAGGAAATGATTTCAGGTATCCTTGAAGATAATGGCTGGCG
AGTCATTATCGCCGAGGATGGATTCAAGGCCCTCAAAGAAATCGAGAAATTTAGTCCCGATGTGATTGTACTAGATATTG
TCATGCCCGGGATGAATGGTTACGAAGTCTGCCGTCGTCTCAAGTCCGATCCCAAACTGAAGAATGTTCCCGTAGTCATT
TGTTCTTCTAAAGGAGAAGAATTTGATCGCTACTGGGGCATAAAACAGGGAGCAGATGCCTATGTCGCTAAGCCCTTTGA
ACCCATTGAATTAGTAGGGACAATCAAAAAACTCCTGCGAAAATAG
ATGAGAGCCGTTTTATTAGTAGAAGACAGTCCCGTTCAACAGGAAATGATTTCAGGTATCCTTGAAGATAATGGCTGGCG
AGTCATTATCGCCGAGGATGGATTCAAGGCCCTCAAAGAAATCGAGAAATTTAGTCCCGATGTGATTGTACTAGATATTG
TCATGCCCGGGATGAATGGTTACGAAGTCTGCCGTCGTCTCAAGTCCGATCCCAAACTGAAGAATGTTCCCGTAGTCATT
TGTTCTTCTAAAGGAGAAGAATTTGATCGCTACTGGGGCATAAAACAGGGAGCAGATGCCTATGTCGCTAAGCCCTTTGA
ACCCATTGAATTAGTAGGGACAATCAAAAAACTCCTGCGAAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
74.38 |
100 |
0.744 |
| vicR | Streptococcus mutans UA159 |
37.19 |
100 |
0.372 |
| micA | Streptococcus pneumoniae Cp1015 |
36.364 |
100 |
0.364 |