Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9779_RS13035 Genome accession   NZ_CP033052
Coordinates   2521831..2522166 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus vallismortis strain Bac111     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516831..2527166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS13015 gcvT 2517422..2518510 (-) 1089 WP_121642890.1 glycine cleavage system aminomethyltransferase GcvT -
  D9779_RS13020 - 2518953..2520626 (+) 1674 WP_010328259.1 DEAD/DEAH box helicase -
  D9779_RS13025 - 2520647..2521441 (+) 795 WP_121642891.1 YqhG family protein -
  D9779_RS13030 sinI 2521624..2521797 (+) 174 WP_010328257.1 anti-repressor SinI Regulator
  D9779_RS13035 sinR 2521831..2522166 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9779_RS13040 tasA 2522251..2523036 (-) 786 WP_010328256.1 biofilm matrix protein TasA -
  D9779_RS13045 sipW 2523099..2523671 (-) 573 WP_082246288.1 signal peptidase I SipW -
  D9779_RS13050 tapA 2523655..2524419 (-) 765 WP_121642892.1 amyloid fiber anchoring/assembly protein TapA -
  D9779_RS13055 - 2524688..2525014 (+) 327 WP_026014435.1 YqzG/YhdC family protein -
  D9779_RS13060 - 2525058..2525237 (-) 180 WP_010328251.1 YqzE family protein -
  D9779_RS13065 comGG 2525309..2525683 (-) 375 WP_121642893.1 competence type IV pilus minor pilin ComGG Machinery gene
  D9779_RS13070 comGF 2525684..2526067 (-) 384 WP_121642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  D9779_RS13075 comGE 2526093..2526440 (-) 348 WP_121642895.1 competence type IV pilus minor pilin ComGE Machinery gene
  D9779_RS13080 comGD 2526424..2526852 (-) 429 WP_121642896.1 competence type IV pilus minor pilin ComGD Machinery gene
  D9779_RS13085 comGC 2526842..2527138 (-) 297 WP_014114400.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=320864 D9779_RS13035 WP_003226345.1 2521831..2522166(+) (sinR) [Bacillus vallismortis strain Bac111]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=320864 D9779_RS13035 WP_003226345.1 2521831..2522166(+) (sinR) [Bacillus vallismortis strain Bac111]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment