Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   D9779_RS13030 Genome accession   NZ_CP033052
Coordinates   2521624..2521797 (+) Length   57 a.a.
NCBI ID   WP_010328257.1    Uniprot ID   A0AAP3CME1
Organism   Bacillus vallismortis strain Bac111     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516624..2526797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS13015 gcvT 2517422..2518510 (-) 1089 WP_121642890.1 glycine cleavage system aminomethyltransferase GcvT -
  D9779_RS13020 - 2518953..2520626 (+) 1674 WP_010328259.1 DEAD/DEAH box helicase -
  D9779_RS13025 - 2520647..2521441 (+) 795 WP_121642891.1 YqhG family protein -
  D9779_RS13030 sinI 2521624..2521797 (+) 174 WP_010328257.1 anti-repressor SinI Regulator
  D9779_RS13035 sinR 2521831..2522166 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9779_RS13040 tasA 2522251..2523036 (-) 786 WP_010328256.1 biofilm matrix protein TasA -
  D9779_RS13045 sipW 2523099..2523671 (-) 573 WP_082246288.1 signal peptidase I SipW -
  D9779_RS13050 tapA 2523655..2524419 (-) 765 WP_121642892.1 amyloid fiber anchoring/assembly protein TapA -
  D9779_RS13055 - 2524688..2525014 (+) 327 WP_026014435.1 YqzG/YhdC family protein -
  D9779_RS13060 - 2525058..2525237 (-) 180 WP_010328251.1 YqzE family protein -
  D9779_RS13065 comGG 2525309..2525683 (-) 375 WP_121642893.1 competence type IV pilus minor pilin ComGG Machinery gene
  D9779_RS13070 comGF 2525684..2526067 (-) 384 WP_121642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  D9779_RS13075 comGE 2526093..2526440 (-) 348 WP_121642895.1 competence type IV pilus minor pilin ComGE Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6646.67 Da        Isoelectric Point: 8.6596

>NTDB_id=320863 D9779_RS13030 WP_010328257.1 2521624..2521797(+) (sinI) [Bacillus vallismortis strain Bac111]
MKNAKQEHFELDQEWVELMMKAKEANISPEEIRKYLLLNKKSAHPGPAARSHTINPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=320863 D9779_RS13030 WP_010328257.1 2521624..2521797(+) (sinI) [Bacillus vallismortis strain Bac111]
ATGAAAAATGCAAAACAAGAGCACTTCGAATTAGATCAAGAATGGGTTGAATTGATGATGAAAGCCAAAGAGGCAAATAT
CAGCCCGGAAGAAATACGAAAATATTTACTTTTAAACAAAAAGTCTGCTCATCCTGGTCCGGCAGCCAGAAGTCATACCA
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

94.737

100

0.947

Multiple sequence alignment