Detailed information NTG0032071

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: LLKF_RS05230
• Genome accession: NC_013656
• Coordinates: 1065375..1066055 (+)
• Length: 226 a.a.
• NCBI ID: WP_012897627.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis KF147
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1060375..1071055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLKF_RS05210 (LLKF_1025)	-	1060739..1061254 (+)	516	WP_003131889.1	DUF2127 domain-containing protein	-
LLKF_RS05215 (LLKF_1026)	-	1061258..1062583 (+)	1326	WP_003131891.1	sensor histidine kinase	-
LLKF_RS05220 (LLKF_1027)	-	1062590..1063246 (+)	657	WP_012897625.1	phosphatase PAP2 family protein	-
LLKF_RS05225 (LLKF_1028)	glmS	1063427..1065244 (+)	1818	WP_012897626.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
LLKF_RS05230 (LLKF_1029)	radC	1065375..1066055 (+)	681	WP_012897627.1	RadC family protein	Machinery gene
LLKF_RS05235 (LLKF_1030)	-	1066254..1067378 (-)	1125	WP_012897628.1	tyrosine-type recombinase/integrase	-
LLKF_RS05240 (LLKF_1031)	-	1067505..1067996 (-)	492	WP_012897629.1	hypothetical protein	-
LLKF_RS05245 (LLKF_1032)	-	1068054..1068254 (-)	201	WP_012897630.1	hypothetical protein	-
LLKF_RS05250 (LLKF_1033)	-	1068266..1068829 (-)	564	WP_012897631.1	hypothetical protein	-
LLKF_RS05255 (LLKF_1034)	-	1068858..1069205 (-)	348	WP_012897632.1	XRE family transcriptional regulator	-
LLKF_RS05260 (LLKF_1035)	-	1069505..1069729 (+)	225	WP_012897633.1	hypothetical protein	-
LLKF_RS05265 (LLKF_1036)	-	1069743..1070075 (+)	333	WP_012897634.1	DUF771 domain-containing protein	-
LLKF_RS05270 (LLKF_1037)	-	1070077..1070325 (+)	249	WP_012897635.1	hypothetical protein	-
LLKF_RS05275 (LLKF_1038)	-	1070322..1070498 (+)	177	WP_012897636.1	putative transcriptional regulator	-
LLKF_RS05280 (LLKF_1039)	-	1070577..1070816 (+)	240	WP_012897637.1	phage protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25771.61 Da
• Isoelectric Point: 7.9253

>NTDB_id=32071 LLKF_RS05230 WP_012897627.1 1065375..1066055(+) (radC) [Lactococcus lactis subsp. lactis KF147]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIGKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide

• Length: 681 bp

>NTDB_id=32071 LLKF_RS05230 WP_012897627.1 1065375..1066055(+) (radC) [Lactococcus lactis subsp. lactis KF147]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGGAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (115-223)

• UPF0758 N-terminal (UPF0758_N) (5-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	45.946	98.23	0.451
radC	Streptococcus pneumoniae R6	45.946	98.23	0.451
radC	Streptococcus pneumoniae D39	45.946	98.23	0.451
radC	Streptococcus gordonii str. Challis substr. CH1	45.495	98.23	0.447
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	40.541	98.23	0.398