Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D9829_RS08850 Genome accession   NZ_CP033044
Coordinates   1802156..1802527 (+) Length   123 a.a.
NCBI ID   WP_121610617.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1797156..1807527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS08820 - 1797209..1798153 (+) 945 WP_121610611.1 ABC transporter permease -
  D9829_RS08825 - 1798200..1798628 (+) 429 WP_121610612.1 DUF4064 domain-containing protein -
  D9829_RS08830 - 1798715..1799017 (+) 303 WP_121610613.1 TIGR04104 family putative zinc finger protein -
  D9829_RS08835 - 1799042..1800835 (-) 1794 WP_121610614.1 LTA synthase family protein -
  D9829_RS08840 - 1801044..1801388 (+) 345 WP_257535706.1 hypothetical protein -
  D9829_RS08845 - 1801465..1801899 (-) 435 WP_121610616.1 YwpF family protein -
  D9829_RS08850 ssbB 1802156..1802527 (+) 372 WP_121610617.1 single-stranded DNA-binding protein Machinery gene
  D9829_RS08855 - 1802529..1802717 (+) 189 WP_121610618.1 hypothetical protein -
  D9829_RS08860 - 1802840..1803247 (-) 408 WP_162990150.1 DUF4181 domain-containing protein -
  D9829_RS29630 - 1803570..1803701 (+) 132 WP_257535707.1 hypothetical protein -
  D9829_RS08865 - 1804181..1805203 (-) 1023 WP_257535708.1 acyltransferase family protein -
  D9829_RS08870 - 1805646..1806125 (-) 480 WP_121610621.1 CBO0543 family protein -
  D9829_RS28745 - 1806294..1806449 (+) 156 WP_162990151.1 hypothetical protein -
  D9829_RS08875 - 1806757..1807014 (-) 258 WP_121610622.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13900.81 Da        Isoelectric Point: 9.0853

>NTDB_id=320676 D9829_RS08850 WP_121610617.1 1802156..1802527(+) (ssbB) [Mesobacillus foraminis strain Bac44]
MINQVILVGRLTRDPELKFTSDGKAVASVTLAVNRQFRNASGEFDTDFVNCILWRKTAENTAQYCKKGSILGVIGRIQTR
QYENQDKKRVYVTEVVAETVQFLSKKTAQTPESEVSQFEPVPQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=320676 D9829_RS08850 WP_121610617.1 1802156..1802527(+) (ssbB) [Mesobacillus foraminis strain Bac44]
ATGATCAACCAGGTGATTCTTGTCGGACGCCTTACGAGGGATCCGGAACTAAAGTTCACAAGTGACGGGAAAGCCGTAGC
AAGTGTGACGCTTGCCGTGAACCGTCAATTCCGCAATGCCAGCGGGGAATTCGACACCGATTTTGTCAATTGCATCCTCT
GGAGAAAAACCGCAGAAAACACCGCTCAATACTGCAAGAAAGGCTCCATCCTCGGCGTCATCGGCAGGATCCAGACGCGC
CAGTACGAAAATCAGGACAAGAAGCGCGTCTATGTAACCGAAGTCGTCGCCGAAACCGTCCAATTTCTCAGTAAAAAAAC
AGCCCAAACCCCGGAAAGTGAGGTCAGCCAATTTGAACCGGTCCCCCAGTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.868

86.179

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.617

86.992

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

58.879

86.992

0.512
  ssbB Lactococcus lactis subsp. cremoris KW2

42.609

93.496

0.398
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

86.179

0.398
  ssbA Streptococcus mutans UA159

45.283

86.179

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

45.283

86.179

0.39
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.283

86.179

0.39
  ssbB/cilA Streptococcus pneumoniae D39

44.34

86.179

0.382
  ssbB/cilA Streptococcus pneumoniae R6

44.34

86.179

0.382
  ssbB/cilA Streptococcus mitis SK321

44.34

86.179

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

44.34

86.179

0.382

Multiple sequence alignment