Detailed information NTG0320676

Bioinformatically predicted

Overview

• Name: crp
• Type: Regulator
• Locus tag: FEF05_RS02645
• Genome accession: NZ_CP040243
• Coordinates: 501429..502103 (-)
• Length: 224 a.a.
• NCBI ID: WP_005713163.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain HPS-1
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 496429..507103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEF05_RS02620 (FEF05_02625)	lolB	496643..497275 (+)	633	WP_149350686.1	lipoprotein insertase outer membrane protein LolB	-
FEF05_RS02625 (FEF05_02630)	ispE	497277..498122 (+)	846	WP_149350687.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
FEF05_RS02630 (FEF05_02635)	-	498150..499100 (+)	951	WP_005713153.1	ribose-phosphate pyrophosphokinase	-
FEF05_RS02635 (FEF05_02640)	pyrD	499469..500476 (+)	1008	WP_075630650.1	quinone-dependent dihydroorotate dehydrogenase	-
FEF05_RS11850	-	500738..500884 (-)	147	WP_021110348.1	hypothetical protein	-
FEF05_RS02640 (FEF05_02645)	-	500923..501174 (-)	252	WP_223300025.1	hypothetical protein	-
FEF05_RS02645 (FEF05_02650)	crp	501429..502103 (-)	675	WP_005713163.1	cAMP-activated global transcriptional regulator CRP	Regulator
FEF05_RS02650 (FEF05_02655)	-	502170..502394 (-)	225	WP_005713165.1	YheU family protein	-
FEF05_RS02655 (FEF05_02660)	slmA	502402..503007 (-)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
FEF05_RS02660 (FEF05_02665)	dut	503016..503471 (-)	456	WP_021119359.1	dUTP diphosphatase	-
FEF05_RS02665 (FEF05_02670)	coaBC	503468..504673 (-)	1206	WP_149350688.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FEF05_RS02670 (FEF05_02675)	radC	504843..505559 (+)	717	WP_149350689.1	RadC family protein	Machinery gene
FEF05_RS02675 (FEF05_02680)	rpmB	505685..505921 (+)	237	WP_006251446.1	50S ribosomal protein L28	-
FEF05_RS02680 (FEF05_02685)	rpmG	505933..506103 (+)	171	WP_005624479.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25192.17 Da
• Isoelectric Point: 6.9079

>NTDB_id=320676 FEF05_RS02645 WP_005713163.1 501429..502103(-) (crp) [Glaesserella parasuis strain HPS-1]
MQDVSISTAQLEDVSPLPSIHDPAVEWFLTHCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ
GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ
TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide

• Length: 675 bp

>NTDB_id=320676 FEF05_RS02645 WP_005713163.1 501429..502103(-) (crp) [Glaesserella parasuis strain HPS-1]
ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG
GTTTTTAACTCACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT
TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA
GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG
TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC
AGATGGCTCGCCGTTTACGAATGACATCAAGGCAGGTTAGCAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA
ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT
TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGCCGTATTTTGAAAATGCTTGAGGATGAAGGGTTAATTTCTGCAC
ATGGTAAAACTATCGTTGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

• Cyclic nucleotide-binding domain (cNMP_binding) (35-121)

• Crp-like helix-turn-helix domain (HTH_Crp_2) (156-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
crp	Vibrio cholerae strain A1552	75.862	90.625	0.687
crp	Haemophilus influenzae Rd KW20	73.399	90.625	0.665
crp	Acinetobacter baumannii D1279779	48	89.286	0.429