Detailed information NTG0320677

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FEF05_RS02670
• Genome accession: NZ_CP040243
• Coordinates: 504843..505559 (+)
• Length: 238 a.a.
• NCBI ID: WP_149350689.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain HPS-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 499843..510559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEF05_RS11850	-	500738..500884 (-)	147	WP_021110348.1	hypothetical protein	-
FEF05_RS02640 (FEF05_02645)	-	500923..501174 (-)	252	WP_223300025.1	hypothetical protein	-
FEF05_RS02645 (FEF05_02650)	crp	501429..502103 (-)	675	WP_005713163.1	cAMP-activated global transcriptional regulator CRP	Regulator
FEF05_RS02650 (FEF05_02655)	-	502170..502394 (-)	225	WP_005713165.1	YheU family protein	-
FEF05_RS02655 (FEF05_02660)	slmA	502402..503007 (-)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
FEF05_RS02660 (FEF05_02665)	dut	503016..503471 (-)	456	WP_021119359.1	dUTP diphosphatase	-
FEF05_RS02665 (FEF05_02670)	coaBC	503468..504673 (-)	1206	WP_149350688.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FEF05_RS02670 (FEF05_02675)	radC	504843..505559 (+)	717	WP_149350689.1	RadC family protein	Machinery gene
FEF05_RS02675 (FEF05_02680)	rpmB	505685..505921 (+)	237	WP_006251446.1	50S ribosomal protein L28	-
FEF05_RS02680 (FEF05_02685)	rpmG	505933..506103 (+)	171	WP_005624479.1	50S ribosomal protein L33	-
FEF05_RS02685 (FEF05_02690)	-	506268..507128 (+)	861	WP_075592556.1	TonB-dependent receptor domain-containing protein	-
FEF05_RS02690 (FEF05_02695)	-	507297..507662 (+)	366	WP_005713180.1	YgiW/YdeI family stress tolerance OB fold protein	-
FEF05_RS02695 (FEF05_02700)	-	507723..508394 (+)	672	WP_010787266.1	response regulator	-
FEF05_RS02700 (FEF05_02705)	qseC	508381..509781 (+)	1401	WP_149350690.1	quorum sensing histidine kinase QseC	-
FEF05_RS02705 (FEF05_02710)	-	509903..509965 (+)	63	Protein_529	RNA-guided endonuclease TnpB family protein	-
FEF05_RS02710 (FEF05_02715)	-	510174..510461 (+)	288	WP_005713186.1	co-chaperone GroES	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 27277.42 Da
• Isoelectric Point: 4.7438

>NTDB_id=320677 FEF05_RS02670 WP_149350689.1 504843..505559(+) (radC) [Glaesserella parasuis strain HPS-1]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYVAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide

• Length: 717 bp

>NTDB_id=320677 FEF05_RS02670 WP_149350689.1 504843..505559(+) (radC) [Glaesserella parasuis strain HPS-1]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATCTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATGTGGC
GGTAATGTATTTTCAATCGGAATTGGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCACATAACCACCCATCTGGCAACTGCAATCCAAGTGAGGCAGATCGGTTTTT
GACTCGAAAAATAGAAATGGCGTGTGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (8-77)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	61.111	90.756	0.555