Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D9842_RS20160 Genome accession   NZ_CP033043
Coordinates   4144160..4144678 (-) Length   172 a.a.
NCBI ID   WP_121664076.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4139160..4149678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS20140 rplI 4140181..4140627 (-) 447 WP_121664073.1 50S ribosomal protein L9 -
  D9842_RS20145 - 4140624..4142597 (-) 1974 WP_121664074.1 DHH family phosphoesterase -
  D9842_RS20150 - 4142638..4143573 (-) 936 WP_162987520.1 YybS family protein -
  D9842_RS20155 rpsR 4143886..4144125 (-) 240 WP_026561616.1 30S ribosomal protein S18 -
  D9842_RS20160 ssbA 4144160..4144678 (-) 519 WP_121664076.1 single-stranded DNA-binding protein Machinery gene
  D9842_RS20165 rpsF 4144714..4145001 (-) 288 WP_098799528.1 30S ribosomal protein S6 -
  D9842_RS20180 ychF 4146296..4147396 (-) 1101 WP_121664079.1 redox-regulated ATPase YchF -
  D9842_RS20185 - 4147557..4149563 (-) 2007 WP_121664080.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18975.61 Da        Isoelectric Point: 4.6437

>NTDB_id=320631 D9842_RS20160 WP_121664076.1 4144160..4144678(-) (ssbA) [Metabacillus litoralis strain Bac94]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFLNCVIWRKQAENVANFLKKGSLAGVDGRLQSR
SYEDQSGKRVYVTEVVAESVQFLEPRGASGGGGNNNYNNNNNNFGGYQENSGNQNPFGSDQNQRNQGRTSFDDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=320631 D9842_RS20160 WP_121664076.1 4144160..4144678(-) (ssbA) [Metabacillus litoralis strain Bac94]
ATGTTGAATCGAGTTGTATTAGTTGGAAGACTAACAAAAGATCCAGATTTGCGATACACACCAAGTGGAGTAGCTGTTGC
TACCTTTACTCTTGCAGTGAACCGTACGTTTACAAACCAACAGGGTGAAAGAGAAGCTGATTTTCTTAACTGTGTGATTT
GGCGTAAACAAGCTGAAAATGTTGCGAACTTCCTTAAAAAAGGTAGTCTTGCAGGAGTTGACGGTCGTTTACAGTCAAGA
AGCTATGAAGATCAAAGTGGAAAACGAGTTTATGTAACAGAAGTTGTTGCAGAAAGTGTCCAATTCCTTGAGCCAAGAGG
AGCAAGCGGCGGTGGCGGTAACAATAACTACAACAACAACAATAACAACTTTGGTGGGTACCAAGAGAACTCTGGTAATC
AAAATCCATTCGGTTCAGATCAAAATCAACGTAATCAAGGTCGTACAAGCTTTGATGACGATCCATTTGCAAATGATGGA
AAACCTATTGATATATCTGACGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

75.287

100

0.762
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

61.628

0.39
  ssb Glaesserella parasuis strain SC1401

35.912

100

0.378

Multiple sequence alignment