Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D9V71_RS02780 Genome accession   NZ_CP033006
Coordinates   585329..585844 (-) Length   171 a.a.
NCBI ID   WP_158340845.1    Uniprot ID   -
Organism   Buchnera aphidicola (Macrosiphum euphorbiae) strain Meu     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 580329..590844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V71_RS02765 (D9V71_02770) - 580894..582486 (-) 1593 WP_158340842.1 peptide chain release factor 3 -
  D9V71_RS02770 (D9V71_02775) ansA 582775..583794 (+) 1020 WP_158340843.1 asparaginase -
  D9V71_RS02775 (D9V71_02780) - 583828..584406 (-) 579 WP_158340844.1 NfuA family Fe-S biogenesis protein -
  D9V71_RS02780 (D9V71_02790) ssb 585329..585844 (-) 516 WP_158340845.1 single-stranded DNA-binding protein Machinery gene
  D9V71_RS02785 (D9V71_02795) dnaB 586520..587917 (+) 1398 WP_158340846.1 replicative DNA helicase -
  D9V71_RS02790 (D9V71_02800) gshB 588229..589191 (+) 963 WP_158340847.1 glutathione synthase -
  D9V71_RS02795 (D9V71_02805) ruvX 589202..589621 (+) 420 WP_158340848.1 Holliday junction resolvase RuvX -
  D9V71_RS02800 (D9V71_02810) - 589693..590331 (+) 639 WP_280094074.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19373.77 Da        Isoelectric Point: 6.3417

>NTDB_id=320484 D9V71_RS02780 WP_158340845.1 585329..585844(-) (ssb) [Buchnera aphidicola (Macrosiphum euphorbiae) strain Meu]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIVVNIGGTMQMLGNRNSNLQTIPIHDNNTATVQTKKIDKVDFDKNIETHKASKDLIHSS
SEIDFDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=320484 D9V71_RS02780 WP_158340845.1 585329..585844(-) (ssb) [Buchnera aphidicola (Macrosiphum euphorbiae) strain Meu]
ATGGCAAGTAGAGGCGTAAATAAAGTTATTCTTATTGGACATTTAGGGCAAGATCCTGAAGTTCGTTATATGCCAAATGG
TAATGCAGTAGTAAATATGACATTAGCCACTTCAGAAAATTGGAAAGATAAAAATACTGGCGAAAATAAAGAAAAAACAG
AATGGCATCGAATAGTTTTATTTGGAAAATTAGCGGAAATTGCTGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATC
GAAGGATCGTTACAAACTAGAAAATGGCAAGATCAAAATGGACTTGAACGTTATACTACAGAAATTGTTGTAAATATTGG
TGGTACAATGCAAATGTTAGGTAATCGCAATTCTAACTTACAGACAATCCCAATACATGATAATAACACTGCTACAGTGC
AAACAAAAAAAATAGATAAAGTAGATTTTGATAAAAACATAGAAACACATAAAGCTAGTAAAGATTTAATTCATTCTTCT
TCAGAAATAGATTTTGATGATGAAATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

44.318

100

0.456
  ssb Neisseria gonorrhoeae MS11

44.318

100

0.456

Multiple sequence alignment