NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	FD482_RS07945	Genome accession	NZ_CP040229
Coordinates	1661296..1661982 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain GD487
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1656296..1666982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FD482_RS07900 (FD482_08130)	rpmA	1656942..1657226 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FD482_RS07905 (FD482_08135)	-	1657238..1657558 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
FD482_RS07910 (FD482_08140)	rplU	1657564..1657872 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FD482_RS07915 (FD482_08145)	mreD	1658234..1658764 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
FD482_RS07920 (FD482_08150)	mreC	1658764..1659606 (-)	843	WP_138766985.1	rod shape-determining protein MreC	-
FD482_RS07925 (FD482_08155)	-	1659804..1659923 (-)	120	WP_000840603.1	hypothetical protein	-
FD482_RS07930 (FD482_08160)	-	1659997..1660470 (-)	474	WP_001236734.1	DUF4930 family protein	-
FD482_RS07935 (FD482_08165)	-	1660630..1660827 (+)	198	WP_000025835.1	hypothetical protein	-
FD482_RS07940 (FD482_08170)	-	1660944..1661228 (-)	285	WP_000171859.1	hypothetical protein	-
FD482_RS07945 (FD482_08175)	ysxA/radC	1661296..1661982 (-)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
FD482_RS07950 (FD482_08180)	-	1661979..1662686 (-)	708	WP_000261102.1	A24 family peptidase	-
FD482_RS07955 (FD482_08185)	-	1662948..1664219 (-)	1272	WP_001108343.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
FD482_RS07960 (FD482_08190)	-	1664232..1666862 (-)	2631	WP_000425348.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=320331 FD482_RS07945 WP_000692886.1 1661296..1661982(-) (ysxA/radC) [Staphylococcus aureus strain GD487]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=320331 FD482_RS07945 WP_000692886.1 1661296..1661982(-) (ysxA/radC) [Staphylococcus aureus strain GD487]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0320331