Detailed information NTG0320230

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I62_RS00975
• Genome accession: NZ_CP032907
• Coordinates: 199015..200151 (+)
• Length: 378 a.a.
• NCBI ID: WP_139533032.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 24-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 194015..205151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I62_RS00940	panD	194457..194810 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
D4I62_RS00945	-	194813..195106 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4I62_RS00950	-	195106..196101 (+)	996	WP_139533027.1	PDZ domain-containing protein	-
D4I62_RS00955	comB6	196109..197164 (+)	1056	WP_139533028.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I62_RS00960	comB7	197180..197293 (+)	114	WP_139533029.1	comB7 lipoprotein	Machinery gene
D4I62_RS00965	comB8	197290..198033 (+)	744	WP_139533030.1	virB8 family protein	Machinery gene
D4I62_RS00970	comB9	198033..199022 (+)	990	WP_139533031.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I62_RS00975	comB10	199015..200151 (+)	1137	WP_139533032.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I62_RS00980	-	200221..201633 (+)	1413	WP_139533033.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I62_RS00985	gmd	201661..202806 (+)	1146	WP_139533034.1	GDP-mannose 4,6-dehydratase	-
D4I62_RS00990	-	202799..203731 (+)	933	WP_139533035.1	GDP-L-fucose synthase	-
D4I62_RS00995	hypE	204039..205037 (-)	999	WP_139533036.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42116.69 Da
• Isoelectric Point: 9.8333

>NTDB_id=320230 D4I62_RS00975 WP_139533032.1 199015..200151(+) (comB10) [Helicobacter pylori strain 24-A-EK1]
MNKWLKGAIVFVGGFATIVTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320230 D4I62_RS00975 WP_139533032.1 199015..200151(+) (comB10) [Helicobacter pylori strain 24-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGTTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTACCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTTATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.354	100	0.974