Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4I62_RS00965 Genome accession   NZ_CP032907
Coordinates   197290..198033 (+) Length   247 a.a.
NCBI ID   WP_139533030.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192290..203033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS00940 panD 194457..194810 (+) 354 WP_000142243.1 aspartate 1-decarboxylase -
  D4I62_RS00945 - 194813..195106 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4I62_RS00950 - 195106..196101 (+) 996 WP_139533027.1 PDZ domain-containing protein -
  D4I62_RS00955 comB6 196109..197164 (+) 1056 WP_139533028.1 P-type conjugative transfer protein TrbL Machinery gene
  D4I62_RS00960 comB7 197180..197293 (+) 114 WP_139533029.1 comB7 lipoprotein Machinery gene
  D4I62_RS00965 comB8 197290..198033 (+) 744 WP_139533030.1 virB8 family protein Machinery gene
  D4I62_RS00970 comB9 198033..199022 (+) 990 WP_139533031.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4I62_RS00975 comB10 199015..200151 (+) 1137 WP_139533032.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4I62_RS00980 - 200221..201633 (+) 1413 WP_139533033.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4I62_RS00985 gmd 201661..202806 (+) 1146 WP_139533034.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28755.95 Da        Isoelectric Point: 8.9604

>NTDB_id=320228 D4I62_RS00965 WP_139533030.1 197290..198033(+) (comB8) [Helicobacter pylori strain 24-A-EK1]
MKEKPFNSEQLNYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=320228 D4I62_RS00965 WP_139533030.1 197290..198033(+) (comB8) [Helicobacter pylori strain 24-A-EK1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGAACTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGGCTGGAGAGGAACCGCTTGAAAATCGCTT
ACAGGCTCTTAGGCTTGATGAGTTTTATCGCGCTTATTTTAGCGATTGTGTTAATCAGCATTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCCGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment