Detailed information NTG0320226

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4I62_RS00955
• Genome accession: NZ_CP032907
• Coordinates: 196109..197164 (+)
• Length: 351 a.a.
• NCBI ID: WP_139533028.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 24-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 191109..202164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I62_RS00925	-	191518..191931 (+)	414	WP_001023005.1	universal stress protein	-
D4I62_RS00930	-	191967..192242 (+)	276	WP_139533895.1	ATP-dependent Clp protease adaptor ClpS	-
D4I62_RS00935	-	192242..194467 (+)	2226	WP_139533026.1	ATP-dependent Clp protease ATP-binding subunit	-
D4I62_RS00940	panD	194457..194810 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
D4I62_RS00945	-	194813..195106 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4I62_RS00950	-	195106..196101 (+)	996	WP_139533027.1	PDZ domain-containing protein	-
D4I62_RS00955	comB6	196109..197164 (+)	1056	WP_139533028.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I62_RS00960	comB7	197180..197293 (+)	114	WP_139533029.1	comB7 lipoprotein	Machinery gene
D4I62_RS00965	comB8	197290..198033 (+)	744	WP_139533030.1	virB8 family protein	Machinery gene
D4I62_RS00970	comB9	198033..199022 (+)	990	WP_139533031.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I62_RS00975	comB10	199015..200151 (+)	1137	WP_139533032.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I62_RS00980	-	200221..201633 (+)	1413	WP_139533033.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39727.73 Da
• Isoelectric Point: 9.0419

>NTDB_id=320226 D4I62_RS00955 WP_139533028.1 196109..197164(+) (comB6) [Helicobacter pylori strain 24-A-EK1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEISVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320226 D4I62_RS00955 WP_139533028.1 196109..197164(+) (comB6) [Helicobacter pylori strain 24-A-EK1]
ATGAAACATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATATCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCAATTATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952