Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4I62_RS00970 Genome accession   NZ_CP032907
Coordinates   198033..199022 (+) Length   329 a.a.
NCBI ID   WP_139533031.1    Uniprot ID   -
Organism   Helicobacter pylori strain 24-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193033..204022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I62_RS00940 panD 194457..194810 (+) 354 WP_000142243.1 aspartate 1-decarboxylase -
  D4I62_RS00945 - 194813..195106 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4I62_RS00950 - 195106..196101 (+) 996 WP_139533027.1 PDZ domain-containing protein -
  D4I62_RS00955 comB6 196109..197164 (+) 1056 WP_139533028.1 P-type conjugative transfer protein TrbL Machinery gene
  D4I62_RS00960 comB7 197180..197293 (+) 114 WP_139533029.1 comB7 lipoprotein Machinery gene
  D4I62_RS00965 comB8 197290..198033 (+) 744 WP_139533030.1 virB8 family protein Machinery gene
  D4I62_RS00970 comB9 198033..199022 (+) 990 WP_139533031.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4I62_RS00975 comB10 199015..200151 (+) 1137 WP_139533032.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4I62_RS00980 - 200221..201633 (+) 1413 WP_139533033.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4I62_RS00985 gmd 201661..202806 (+) 1146 WP_139533034.1 GDP-mannose 4,6-dehydratase -
  D4I62_RS00990 - 202799..203731 (+) 933 WP_139533035.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 37898.65 Da        Isoelectric Point: 9.5342

>NTDB_id=320229 D4I62_RS00970 WP_139533031.1 198033..199022(+) (comB9) [Helicobacter pylori strain 24-A-EK1]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLSHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKEKENKENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYC
LGICSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCI
RFVKKGKDE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=320229 D4I62_RS00970 WP_139533031.1 198033..199022(+) (comB9) [Helicobacter pylori strain 24-A-EK1]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAGCCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGTTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTACTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCC
CACAAACAACAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACA
CTAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTAGGGATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTTCAA
ATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATC
CGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

95.758

100

0.96

Multiple sequence alignment