Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TMZ1T_RS15940 Genome accession   NC_011662
Coordinates   3624163..3624666 (-) Length   167 a.a.
NCBI ID   WP_012585914.1    Uniprot ID   A0A0C3N3R6
Organism   Thauera aminoaromatica     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3619163..3629666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS15920 (Tmz1t_3303) - 3620641..3621717 (-) 1077 WP_012585912.1 efflux RND transporter periplasmic adaptor subunit -
  TMZ1T_RS15925 (Tmz1t_3304) - 3621869..3622255 (-) 387 WP_004298480.1 sirohydrochlorin chelatase -
  TMZ1T_RS15930 (Tmz1t_3305) - 3622252..3623076 (-) 825 WP_012585913.1 ThiF family adenylyltransferase -
  TMZ1T_RS15935 (Tmz1t_3306) - 3623084..3624046 (-) 963 WP_004298475.1 MBL fold metallo-hydrolase -
  TMZ1T_RS15940 (Tmz1t_3307) ssb 3624163..3624666 (-) 504 WP_012585914.1 single-stranded DNA-binding protein Machinery gene
  TMZ1T_RS15945 (Tmz1t_3308) - 3624736..3625917 (-) 1182 WP_004298472.1 MFS transporter -
  TMZ1T_RS15950 (Tmz1t_3309) uvrA 3626067..3628889 (+) 2823 WP_012585916.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18271.19 Da        Isoelectric Point: 5.9625

>NTDB_id=32017 TMZ1T_RS15940 WP_012585914.1 3624163..3624666(-) (ssb) [Thauera aminoaromatica]
MASVNKVILIGNLGADPESRFAPSGDAICNIRLATTETWRDKNTGERREATEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGRREGGDAPMRGGEGGGWDAGAQSAPARQPAAPAQRTQPQSAPPQQSGGFGD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=32017 TMZ1T_RS15940 WP_012585914.1 3624163..3624666(-) (ssb) [Thauera aminoaromatica]
ATGGCATCCGTCAATAAAGTGATCCTGATCGGCAACCTCGGCGCCGATCCGGAAAGCCGCTTCGCCCCCTCCGGCGACGC
GATCTGCAACATCCGCCTGGCCACCACCGAGACCTGGCGGGACAAGAACACCGGCGAGCGCCGCGAGGCCACCGAATGGC
ACCGCGTCGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCAGCCAGGTGTACATCGAGGGC
AGCCTGCGCACGCGCAAGTGGCAGGACCAGAGCGGCCAGGACCGCTACACCACCGAGATCCGCGCCGACGAGATGAAGAT
GCTCGGCCGCCGCGAAGGCGGCGATGCGCCGATGCGCGGCGGCGAGGGCGGTGGCTGGGATGCCGGCGCCCAATCCGCGC
CGGCCCGCCAGCCCGCAGCCCCCGCGCAGCGCACGCAGCCGCAGTCGGCGCCGCCGCAGCAGTCGGGCGGCTTCGGCGAC
TTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3N3R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.016

100

0.647
  ssb Glaesserella parasuis strain SC1401

52.128

100

0.587
  ssb Neisseria meningitidis MC58

47.778

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.515

Multiple sequence alignment