Detailed information NTG0320128

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K40_RS07455
• Genome accession: NZ_CP032902
• Coordinates: 1509327..1510457 (-)
• Length: 376 a.a.
• NCBI ID: WP_139521150.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 280-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1504327..1515457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K40_RS07435	hypE	1504490..1505488 (+)	999	WP_139521146.1	hydrogenase expression/formation protein HypE	-
D4K40_RS07440	-	1505733..1506665 (-)	933	WP_139521147.1	GDP-L-fucose synthase	-
D4K40_RS07445	gmd	1506658..1507803 (-)	1146	WP_139521148.1	GDP-mannose 4,6-dehydratase	-
D4K40_RS07450	-	1507845..1509257 (-)	1413	WP_139521149.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K40_RS07455	comB10	1509327..1510457 (-)	1131	WP_139521150.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K40_RS07460	comB9	1510450..1511430 (-)	981	WP_139521151.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K40_RS07465	comB8	1511430..1512167 (-)	738	WP_139521152.1	virB8 family protein	Machinery gene
D4K40_RS07470	comB7	1512164..1512277 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K40_RS07475	comB6	1512293..1513348 (-)	1056	WP_139521153.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K40_RS07480	-	1513356..1514351 (-)	996	WP_139521154.1	PDZ domain-containing protein	-
D4K40_RS07485	-	1514351..1514653 (-)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
D4K40_RS07490	panD	1514656..1515009 (-)	354	WP_033765057.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41946.46 Da
• Isoelectric Point: 9.8368

>NTDB_id=320128 D4K40_RS07455 WP_139521150.1 1509327..1510457(-) (comB10) [Helicobacter pylori strain 280-A-EK1]
MNKWLKGAVVFVGCFATITTISLVYHQKPKAPLNNQPSLLNDNEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSHPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=320128 D4K40_RS07455 WP_139521150.1 1509327..1510457(-) (comB10) [Helicobacter pylori strain 280-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGTGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACAATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACCAGCCATCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATTACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTAATTAG
AGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.606	100	0.976