Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4K40_RS07465 Genome accession   NZ_CP032902
Coordinates   1511430..1512167 (-) Length   245 a.a.
NCBI ID   WP_139521152.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506430..1517167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS07445 gmd 1506658..1507803 (-) 1146 WP_139521148.1 GDP-mannose 4,6-dehydratase -
  D4K40_RS07450 - 1507845..1509257 (-) 1413 WP_139521149.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4K40_RS07455 comB10 1509327..1510457 (-) 1131 WP_139521150.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4K40_RS07460 comB9 1510450..1511430 (-) 981 WP_139521151.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4K40_RS07465 comB8 1511430..1512167 (-) 738 WP_139521152.1 virB8 family protein Machinery gene
  D4K40_RS07470 comB7 1512164..1512277 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4K40_RS07475 comB6 1512293..1513348 (-) 1056 WP_139521153.1 P-type conjugative transfer protein TrbL Machinery gene
  D4K40_RS07480 - 1513356..1514351 (-) 996 WP_139521154.1 PDZ domain-containing protein -
  D4K40_RS07485 - 1514351..1514653 (-) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  D4K40_RS07490 panD 1514656..1515009 (-) 354 WP_033765057.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28524.76 Da        Isoelectric Point: 8.9546

>NTDB_id=320130 D4K40_RS07465 WP_139521152.1 1511430..1512167(-) (comB8) [Helicobacter pylori strain 280-A-EK1]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDAPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=320130 D4K40_RS07465 WP_139521152.1 1511430..1512167(-) (comB8) [Helicobacter pylori strain 280-A-EK1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATTTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGGCTAGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GTGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCTGCTAAACTTTTGAATGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACGCCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.984

Multiple sequence alignment