Detailed information NTG0320132

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4K40_RS07475
• Genome accession: NZ_CP032902
• Coordinates: 1512293..1513348 (-)
• Length: 351 a.a.
• NCBI ID: WP_139521153.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 280-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1507293..1518348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K40_RS07450	-	1507845..1509257 (-)	1413	WP_139521149.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K40_RS07455	comB10	1509327..1510457 (-)	1131	WP_139521150.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K40_RS07460	comB9	1510450..1511430 (-)	981	WP_139521151.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K40_RS07465	comB8	1511430..1512167 (-)	738	WP_139521152.1	virB8 family protein	Machinery gene
D4K40_RS07470	comB7	1512164..1512277 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K40_RS07475	comB6	1512293..1513348 (-)	1056	WP_139521153.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K40_RS07480	-	1513356..1514351 (-)	996	WP_139521154.1	PDZ domain-containing protein	-
D4K40_RS07485	-	1514351..1514653 (-)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
D4K40_RS07490	panD	1514656..1515009 (-)	354	WP_033765057.1	aspartate 1-decarboxylase	-
D4K40_RS07495	-	1514999..1517224 (-)	2226	WP_139521155.1	ATP-dependent Clp protease ATP-binding subunit	-
D4K40_RS07500	-	1517224..1517499 (-)	276	WP_000784903.1	ATP-dependent Clp protease adaptor ClpS	-
D4K40_RS07505	-	1517522..1517935 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39840.78 Da
• Isoelectric Point: 9.0413

>NTDB_id=320132 D4K40_RS07475 WP_139521153.1 1512293..1513348(-) (comB6) [Helicobacter pylori strain 280-A-EK1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALWFVGFFVLFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320132 D4K40_RS07475 WP_139521153.1 1512293..1513348(-) (comB6) [Helicobacter pylori strain 280-A-EK1]
ATGAAAAATGATGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGTGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954