Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E6P00_RS06200 Genome accession   NZ_CP040127
Coordinates   774521..775018 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA298     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 769521..780018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P00_RS06185 (E6P00_06185) bfr 769529..769993 (+) 465 WP_003093668.1 bacterioferritin -
  E6P00_RS06190 (E6P00_06190) uvrA 770065..772902 (-) 2838 WP_019726773.1 excinuclease ABC subunit UvrA Machinery gene
  E6P00_RS06195 (E6P00_06195) - 773116..774504 (+) 1389 WP_003103910.1 MFS transporter -
  E6P00_RS06200 (E6P00_06200) ssb 774521..775018 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  E6P00_RS06205 (E6P00_06205) pchA 775107..776537 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  E6P00_RS06210 (E6P00_06210) pchB 776534..776839 (-) 306 WP_009877106.1 isochorismate lyase PchB -
  E6P00_RS06215 (E6P00_06215) pchC 776839..777594 (-) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -
  E6P00_RS06220 (E6P00_06220) pchD 777591..779234 (-) 1644 WP_009877104.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=320095 E6P00_RS06200 WP_003114685.1 774521..775018(+) (ssb) [Pseudomonas aeruginosa strain PA298]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=320095 E6P00_RS06200 WP_003114685.1 774521..775018(+) (ssb) [Pseudomonas aeruginosa strain PA298]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515