Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D9C08_RS03295 Genome accession   NZ_CP032872
Coordinates   627699..628217 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 622699..633217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS03265 (D9C08_03265) yyaJ 623209..624564 (+) 1356 WP_014481501.1 MFS transporter -
  D9C08_RS03270 (D9C08_03270) maa 624598..625152 (-) 555 WP_069837908.1 sugar O-acetyltransferase -
  D9C08_RS03275 (D9C08_03275) yyaH 625168..625548 (-) 381 WP_069837909.1 VOC family protein -
  D9C08_RS03280 (D9C08_03280) ccpB 625604..626534 (-) 931 Protein_644 transcriptional regulator CcpB -
  D9C08_RS03285 (D9C08_03285) xth 626593..627351 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  D9C08_RS03290 (D9C08_03290) rpsR 627416..627655 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  D9C08_RS03295 (D9C08_03295) ssbA 627699..628217 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  D9C08_RS03300 (D9C08_03300) rpsF 628258..628545 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  D9C08_RS03305 (D9C08_03305) ychF 628656..629756 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  D9C08_RS03310 (D9C08_03310) yyaE 629883..631886 (-) 2004 WP_069837910.1 molybdopterin-dependent oxidoreductase -
  D9C08_RS03315 (D9C08_03315) yyzM 631937..632143 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=319895 D9C08_RS03295 WP_003219228.1 627699..628217(-) (ssbA) [Bacillus subtilis subsp. subtilis strain 2KL1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=319895 D9C08_RS03295 WP_003219228.1 627699..628217(-) (ssbA) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment