Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | D9C18_RS10235 | Genome accession | NZ_CP032865 |
| Coordinates | 1918676..1919194 (+) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis subsp. subtilis strain N3-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1913676..1924194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9C18_RS10215 (D9C18_10215) | yyzM | 1914750..1914956 (+) | 207 | WP_003226838.1 | DUF951 family protein | - |
| D9C18_RS10220 (D9C18_10220) | yyaE | 1915007..1917010 (+) | 2004 | WP_014481509.1 | molybdopterin-dependent oxidoreductase | - |
| D9C18_RS10225 (D9C18_10225) | ychF | 1917137..1918237 (+) | 1101 | WP_003242727.1 | redox-regulated ATPase YchF | - |
| D9C18_RS10230 (D9C18_10230) | rpsF | 1918348..1918635 (+) | 288 | WP_003244064.1 | 30S ribosomal protein S6 | - |
| D9C18_RS10235 (D9C18_10235) | ssbA | 1918676..1919194 (+) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| D9C18_RS10240 (D9C18_10240) | rpsR | 1919238..1919477 (+) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| D9C18_RS10245 (D9C18_10245) | xth | 1919541..1920299 (+) | 759 | WP_014481508.1 | exodeoxyribonuclease III | - |
| D9C18_RS10250 (D9C18_10250) | ccpB | 1920359..1920733 (+) | 375 | Protein_1956 | transcriptional regulator CcpB | - |
| D9C18_RS10255 (D9C18_10255) | - | 1921653..1922927 (-) | 1275 | WP_014481505.1 | MFS transporter | - |
| D9C18_RS10260 (D9C18_10260) | - | 1922905..1923933 (-) | 1029 | WP_014481504.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=319722 D9C18_RS10235 WP_003219228.1 1918676..1919194(+) (ssbA) [Bacillus subtilis subsp. subtilis strain N3-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=319722 D9C18_RS10235 WP_003219228.1 1918676..1919194(+) (ssbA) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |