Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9C14_RS03155 Genome accession   NZ_CP032860
Coordinates   580269..580913 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 575269..585913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS03120 (D9C14_03120) mrpB 576461..576892 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  D9C14_RS03125 (D9C14_03125) mrpC 576892..577233 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  D9C14_RS03130 (D9C14_03130) mrpD 577226..578707 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  D9C14_RS03135 (D9C14_03135) mrpE 578713..579189 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D9C14_RS03140 (D9C14_03140) mrpF 579189..579473 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D9C14_RS03145 (D9C14_03145) mnhG 579457..579831 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  D9C14_RS03150 (D9C14_03150) yuxO 579870..580250 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  D9C14_RS03155 (D9C14_03155) comA 580269..580913 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D9C14_RS03160 (D9C14_03160) comP 580994..583306 (-) 2313 WP_047183111.1 histidine kinase Regulator
  D9C14_RS03165 (D9C14_03165) comX 583322..583543 (-) 222 WP_014114983.1 competence pheromone ComX -
  D9C14_RS03170 (D9C14_03170) - 583540..584409 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  D9C14_RS03175 (D9C14_03175) degQ 584594..584734 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D9C14_RS03180 (D9C14_03180) - 584956..585081 (+) 126 WP_121549029.1 hypothetical protein -
  D9C14_RS03185 (D9C14_03185) - 585196..585564 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=319460 D9C14_RS03155 WP_003220716.1 580269..580913(-) (comA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=319460 D9C14_RS03155 WP_003220716.1 580269..580913(-) (comA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment