Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB57_RS18285 Genome accession   NC_011586
Coordinates   3733278..3734096 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii AB0057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3728278..3739096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB57_RS18270 (AB57_3619) pilE 3728497..3728922 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  AB57_RS18275 (AB57_3620) pilY2 3728919..3729401 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  AB57_RS18280 (AB57_3621) pilY1 3729412..3733266 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  AB57_RS18285 (AB57_3622) pilX 3733278..3734096 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB57_RS18290 (AB57_3623) pilW 3734093..3735094 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB57_RS18295 (AB57_3624) pilV 3735095..3735655 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB57_RS18300 (AB57_3625) fimU 3735649..3736122 (-) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  AB57_RS18305 (AB57_3626) ispH 3736292..3737242 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB57_RS18310 (AB57_3627) gmk 3737365..3737994 (+) 630 WP_000015937.1 guanylate kinase -
  AB57_RS18315 (AB57_3628) rpoZ 3738067..3738345 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB57_RS19930 - 3738384..3738514 (+) 131 Protein_3546 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=31901 AB57_RS18285 WP_000149374.1 3733278..3734096(-) (pilX) [Acinetobacter baumannii AB0057]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=31901 AB57_RS18285 WP_000149374.1 3733278..3734096(-) (pilX) [Acinetobacter baumannii AB0057]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment