Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AB57_RS18300 Genome accession   NC_011586
Coordinates   3735649..3736122 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii AB0057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730649..3741122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB57_RS18285 (AB57_3622) pilX 3733278..3734096 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB57_RS18290 (AB57_3623) pilW 3734093..3735094 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB57_RS18295 (AB57_3624) pilV 3735095..3735655 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB57_RS18300 (AB57_3625) fimU 3735649..3736122 (-) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  AB57_RS18305 (AB57_3626) ispH 3736292..3737242 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB57_RS18310 (AB57_3627) gmk 3737365..3737994 (+) 630 WP_000015937.1 guanylate kinase -
  AB57_RS18315 (AB57_3628) rpoZ 3738067..3738345 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB57_RS19930 - 3738384..3738514 (+) 131 Protein_3546 hypothetical protein -
  AB57_RS18320 (AB57_3629) - 3738554..3740659 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=31904 AB57_RS18300 WP_001214060.1 3735649..3736122(-) (fimU) [Acinetobacter baumannii AB0057]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=31904 AB57_RS18300 WP_001214060.1 3735649..3736122(-) (fimU) [Acinetobacter baumannii AB0057]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment