Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   AB57_RS18295 Genome accession   NC_011586
Coordinates   3735095..3735655 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii AB0057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730095..3740655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB57_RS18285 (AB57_3622) pilX 3733278..3734096 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB57_RS18290 (AB57_3623) pilW 3734093..3735094 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB57_RS18295 (AB57_3624) pilV 3735095..3735655 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB57_RS18300 (AB57_3625) fimU 3735649..3736122 (-) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  AB57_RS18305 (AB57_3626) ispH 3736292..3737242 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB57_RS18310 (AB57_3627) gmk 3737365..3737994 (+) 630 WP_000015937.1 guanylate kinase -
  AB57_RS18315 (AB57_3628) rpoZ 3738067..3738345 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB57_RS19930 - 3738384..3738514 (+) 131 Protein_3546 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=31903 AB57_RS18295 WP_002194578.1 3735095..3735655(-) (pilV) [Acinetobacter baumannii AB0057]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=31903 AB57_RS18295 WP_002194578.1 3735095..3735655(-) (pilV) [Acinetobacter baumannii AB0057]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGTTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414

Multiple sequence alignment