Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FDK04_RS03990 Genome accession   NZ_CP039990
Coordinates   809611..810108 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain T2101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 804611..815108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDK04_RS03975 (FDK04_04085) bfr 804619..805083 (+) 465 WP_023910872.1 bacterioferritin -
  FDK04_RS03980 (FDK04_04090) uvrA 805155..807992 (-) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  FDK04_RS03985 (FDK04_04095) - 808206..809594 (+) 1389 WP_003103910.1 MFS transporter -
  FDK04_RS03990 (FDK04_04100) ssb 809611..810108 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  FDK04_RS03995 (FDK04_04105) pchA 810197..811627 (-) 1431 WP_003110570.1 isochorismate synthase PchA -
  FDK04_RS04000 (FDK04_04110) pchB 811624..811929 (-) 306 WP_009877106.1 isochorismate lyase PchB -
  FDK04_RS04005 (FDK04_04115) pchC 811929..812684 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  FDK04_RS04010 (FDK04_04120) pchD 812681..814324 (-) 1644 WP_016852424.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=318948 FDK04_RS03990 WP_003114685.1 809611..810108(+) (ssb) [Pseudomonas aeruginosa strain T2101]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=318948 FDK04_RS03990 WP_003114685.1 809611..810108(+) (ssb) [Pseudomonas aeruginosa strain T2101]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment