Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AFLV_RS04915 | Genome accession | NC_011567 |
| Coordinates | 920484..921554 (+) | Length | 356 a.a. |
| NCBI ID | WP_080513103.1 | Uniprot ID | - |
| Organism | Anoxybacillus flavithermus WK1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 915484..926554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFLV_RS04880 (Aflv_0897) | - | 915665..916579 (+) | 915 | WP_012574560.1 | M14 family metallocarboxypeptidase | - |
| AFLV_RS04885 (Aflv_0898) | - | 916606..916791 (-) | 186 | WP_006317944.1 | DUF2759 domain-containing protein | - |
| AFLV_RS04890 (Aflv_0899) | - | 916924..917556 (+) | 633 | WP_012574561.1 | MBL fold metallo-hydrolase | - |
| AFLV_RS04895 (Aflv_0900) | - | 917671..918774 (+) | 1104 | WP_012574562.1 | SAM-dependent methyltransferase | - |
| AFLV_RS04900 (Aflv_0901) | - | 918803..919045 (-) | 243 | WP_004889537.1 | DUF2626 domain-containing protein | - |
| AFLV_RS04905 (Aflv_0902) | - | 919115..919813 (-) | 699 | WP_012574563.1 | helix-turn-helix domain-containing protein | - |
| AFLV_RS04910 (Aflv_0903) | - | 920003..920374 (+) | 372 | WP_012574564.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| AFLV_RS04915 (Aflv_0904) | comGA | 920484..921554 (+) | 1071 | WP_080513103.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AFLV_RS04920 (Aflv_0905) | comGB | 921538..922569 (+) | 1032 | WP_012574566.1 | competence type IV pilus assembly protein ComGB | - |
| AFLV_RS04925 (Aflv_0906) | comGC | 922577..922879 (+) | 303 | WP_012574567.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AFLV_RS04930 (Aflv_0907) | comGD | 922872..923309 (+) | 438 | WP_012574568.1 | competence type IV pilus minor pilin ComGD | - |
| AFLV_RS04935 (Aflv_0908) | comGE | 923293..923601 (+) | 309 | WP_012574569.1 | competence type IV pilus minor pilin ComGE | - |
| AFLV_RS04940 (Aflv_0909) | comGF | 923598..924020 (+) | 423 | WP_012574570.1 | competence type IV pilus minor pilin ComGF | - |
| AFLV_RS04945 (Aflv_0910) | comGG | 923992..924408 (+) | 417 | WP_041638133.1 | competence type IV pilus minor pilin ComGG | - |
| AFLV_RS04950 (Aflv_0911) | - | 924423..924929 (+) | 507 | WP_041638134.1 | shikimate kinase | - |
| AFLV_RS04955 (Aflv_0912) | - | 924956..925144 (+) | 189 | WP_012574573.1 | YqzE family protein | - |
| AFLV_RS04960 (Aflv_0913) | - | 925159..925929 (-) | 771 | WP_041638136.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39886.58 Da Isoelectric Point: 8.6848
>NTDB_id=31836 AFLV_RS04915 WP_080513103.1 920484..921554(+) (comGA) [Anoxybacillus flavithermus WK1]
MQTIEQLADRLIEDAYILQASDIHIVPRKQDALVQFRLGGMLVTKNVLSKQTCERLLAHFKFLADMDIGERRRPQSGAME
MNVAHTTVHLRLSTLPTIYDESLVIRLLPLHSFLPLKQLALFPSTVKKLLALLNHSHGLIIFTGPTGSGKTTTLYSLLNV
CRHHFQRNVITLEDPVEKRAEDVLQVQVNEKAGITYATGLKAILRHDPDVIMVGEIRDAETARIAVRAALTGHLVLTTMH
TKDAVGAIYRLLEFGVPFQEMAQTLVAVTAQRLVQLKCPFCEGECSSFCRQYRPVRRAGVYELLYGNELAKAMRAAKGEQ
ATYVYTRLKDVIKKGIALGFLNESVIESWLLDEATL
MQTIEQLADRLIEDAYILQASDIHIVPRKQDALVQFRLGGMLVTKNVLSKQTCERLLAHFKFLADMDIGERRRPQSGAME
MNVAHTTVHLRLSTLPTIYDESLVIRLLPLHSFLPLKQLALFPSTVKKLLALLNHSHGLIIFTGPTGSGKTTTLYSLLNV
CRHHFQRNVITLEDPVEKRAEDVLQVQVNEKAGITYATGLKAILRHDPDVIMVGEIRDAETARIAVRAALTGHLVLTTMH
TKDAVGAIYRLLEFGVPFQEMAQTLVAVTAQRLVQLKCPFCEGECSSFCRQYRPVRRAGVYELLYGNELAKAMRAAKGEQ
ATYVYTRLKDVIKKGIALGFLNESVIESWLLDEATL
Nucleotide
Download Length: 1071 bp
>NTDB_id=31836 AFLV_RS04915 WP_080513103.1 920484..921554(+) (comGA) [Anoxybacillus flavithermus WK1]
TTGCAAACAATTGAGCAGTTGGCGGATCGACTAATTGAGGATGCGTATATTCTTCAAGCTTCCGACATCCATATCGTTCC
GCGTAAACAAGATGCGCTCGTTCAATTTCGGTTGGGAGGGATGCTCGTTACAAAAAACGTGTTATCAAAACAGACGTGTG
AACGTTTGCTTGCCCACTTTAAGTTTCTTGCTGATATGGATATTGGCGAACGACGTCGCCCACAAAGCGGCGCGATGGAA
ATGAATGTTGCCCACACAACTGTCCATCTTCGCTTATCAACATTACCCACGATTTATGATGAAAGTTTAGTTATCCGCTT
GCTCCCGTTACACTCATTTCTTCCGCTCAAACAACTCGCGCTATTTCCGTCAACAGTAAAAAAGTTGCTTGCGTTACTAA
ATCACTCCCATGGACTTATTATTTTCACAGGACCTACAGGATCTGGAAAGACAACAACGTTATACAGTTTGTTAAACGTA
TGTCGCCATCATTTTCAACGAAATGTCATTACGTTAGAAGATCCGGTTGAAAAGCGGGCGGAAGATGTGTTGCAAGTACA
AGTGAATGAAAAAGCTGGAATTACGTATGCAACAGGATTAAAAGCGATTTTGCGGCACGATCCAGATGTCATTATGGTAG
GAGAAATTCGTGATGCTGAAACCGCACGAATAGCTGTGCGCGCGGCGCTTACTGGACATCTTGTACTCACAACGATGCAC
ACGAAAGATGCGGTTGGAGCGATTTACCGTCTTCTTGAGTTTGGTGTACCATTTCAAGAAATGGCGCAAACGTTAGTCGC
TGTGACAGCCCAACGTCTTGTGCAATTGAAGTGCCCATTTTGTGAAGGAGAGTGCTCATCTTTTTGCCGACAGTATCGTC
CTGTCCGACGAGCAGGTGTTTATGAGTTGTTATATGGAAATGAGCTAGCAAAGGCAATGCGAGCTGCAAAAGGCGAGCAA
GCGACATACGTGTATACTCGGTTAAAAGATGTCATTAAAAAAGGAATTGCGCTCGGTTTTTTGAACGAGAGCGTCATTGA
AAGTTGGTTGTTAGATGAAGCGACGCTGTAA
TTGCAAACAATTGAGCAGTTGGCGGATCGACTAATTGAGGATGCGTATATTCTTCAAGCTTCCGACATCCATATCGTTCC
GCGTAAACAAGATGCGCTCGTTCAATTTCGGTTGGGAGGGATGCTCGTTACAAAAAACGTGTTATCAAAACAGACGTGTG
AACGTTTGCTTGCCCACTTTAAGTTTCTTGCTGATATGGATATTGGCGAACGACGTCGCCCACAAAGCGGCGCGATGGAA
ATGAATGTTGCCCACACAACTGTCCATCTTCGCTTATCAACATTACCCACGATTTATGATGAAAGTTTAGTTATCCGCTT
GCTCCCGTTACACTCATTTCTTCCGCTCAAACAACTCGCGCTATTTCCGTCAACAGTAAAAAAGTTGCTTGCGTTACTAA
ATCACTCCCATGGACTTATTATTTTCACAGGACCTACAGGATCTGGAAAGACAACAACGTTATACAGTTTGTTAAACGTA
TGTCGCCATCATTTTCAACGAAATGTCATTACGTTAGAAGATCCGGTTGAAAAGCGGGCGGAAGATGTGTTGCAAGTACA
AGTGAATGAAAAAGCTGGAATTACGTATGCAACAGGATTAAAAGCGATTTTGCGGCACGATCCAGATGTCATTATGGTAG
GAGAAATTCGTGATGCTGAAACCGCACGAATAGCTGTGCGCGCGGCGCTTACTGGACATCTTGTACTCACAACGATGCAC
ACGAAAGATGCGGTTGGAGCGATTTACCGTCTTCTTGAGTTTGGTGTACCATTTCAAGAAATGGCGCAAACGTTAGTCGC
TGTGACAGCCCAACGTCTTGTGCAATTGAAGTGCCCATTTTGTGAAGGAGAGTGCTCATCTTTTTGCCGACAGTATCGTC
CTGTCCGACGAGCAGGTGTTTATGAGTTGTTATATGGAAATGAGCTAGCAAAGGCAATGCGAGCTGCAAAAGGCGAGCAA
GCGACATACGTGTATACTCGGTTAAAAGATGTCATTAAAAAAGGAATTGCGCTCGGTTTTTTGAACGAGAGCGTCATTGA
AAGTTGGTTGTTAGATGAAGCGACGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
60.169 |
99.438 |
0.598 |
| pilB | Glaesserella parasuis strain SC1401 |
40.346 |
97.472 |
0.393 |
| pilF | Thermus thermophilus HB27 |
39.42 |
96.91 |
0.382 |