Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AFLV_RS04925 | Genome accession | NC_011567 |
| Coordinates | 922577..922879 (+) | Length | 100 a.a. |
| NCBI ID | WP_012574567.1 | Uniprot ID | B7GHC3 |
| Organism | Anoxybacillus flavithermus WK1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 917577..927879
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFLV_RS04895 (Aflv_0900) | - | 917671..918774 (+) | 1104 | WP_012574562.1 | SAM-dependent methyltransferase | - |
| AFLV_RS04900 (Aflv_0901) | - | 918803..919045 (-) | 243 | WP_004889537.1 | DUF2626 domain-containing protein | - |
| AFLV_RS04905 (Aflv_0902) | - | 919115..919813 (-) | 699 | WP_012574563.1 | helix-turn-helix domain-containing protein | - |
| AFLV_RS04910 (Aflv_0903) | - | 920003..920374 (+) | 372 | WP_012574564.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| AFLV_RS04915 (Aflv_0904) | comGA | 920484..921554 (+) | 1071 | WP_080513103.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AFLV_RS04920 (Aflv_0905) | comGB | 921538..922569 (+) | 1032 | WP_012574566.1 | competence type IV pilus assembly protein ComGB | - |
| AFLV_RS04925 (Aflv_0906) | comGC | 922577..922879 (+) | 303 | WP_012574567.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AFLV_RS04930 (Aflv_0907) | comGD | 922872..923309 (+) | 438 | WP_012574568.1 | competence type IV pilus minor pilin ComGD | - |
| AFLV_RS04935 (Aflv_0908) | comGE | 923293..923601 (+) | 309 | WP_012574569.1 | competence type IV pilus minor pilin ComGE | - |
| AFLV_RS04940 (Aflv_0909) | comGF | 923598..924020 (+) | 423 | WP_012574570.1 | competence type IV pilus minor pilin ComGF | - |
| AFLV_RS04945 (Aflv_0910) | comGG | 923992..924408 (+) | 417 | WP_041638133.1 | competence type IV pilus minor pilin ComGG | - |
| AFLV_RS04950 (Aflv_0911) | - | 924423..924929 (+) | 507 | WP_041638134.1 | shikimate kinase | - |
| AFLV_RS04955 (Aflv_0912) | - | 924956..925144 (+) | 189 | WP_012574573.1 | YqzE family protein | - |
| AFLV_RS04960 (Aflv_0913) | - | 925159..925929 (-) | 771 | WP_041638136.1 | YqhG family protein | - |
| AFLV_RS04965 (Aflv_0914) | - | 925916..927559 (-) | 1644 | WP_012574575.1 | SNF2-related protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 11217.23 Da Isoelectric Point: 6.4497
>NTDB_id=31837 AFLV_RS04925 WP_012574567.1 922577..922879(+) (comGC) [Anoxybacillus flavithermus WK1]
MYMRNEKGFTLIEMLIVLMVITILILITIPNVTKHNSMINNKGCSAFIKMVQSQVKAYEMEHGTIPSVQQLIDGKYIESN
RCPNGKTIVITSEGDVLEGE
MYMRNEKGFTLIEMLIVLMVITILILITIPNVTKHNSMINNKGCSAFIKMVQSQVKAYEMEHGTIPSVQQLIDGKYIESN
RCPNGKTIVITSEGDVLEGE
Nucleotide
Download Length: 303 bp
>NTDB_id=31837 AFLV_RS04925 WP_012574567.1 922577..922879(+) (comGC) [Anoxybacillus flavithermus WK1]
ATGTACATGCGAAATGAAAAAGGATTTACGTTAATTGAAATGCTAATTGTGTTAATGGTTATCACGATTTTAATTTTAAT
TACGATTCCAAATGTAACAAAGCATAACAGCATGATTAACAACAAAGGATGTTCAGCTTTTATAAAAATGGTTCAGTCCC
AGGTCAAAGCGTATGAAATGGAGCACGGTACAATTCCATCTGTTCAGCAATTAATAGATGGAAAATACATTGAAAGCAAC
CGTTGTCCGAATGGGAAAACGATTGTCATTACGAGTGAAGGGGACGTTTTAGAAGGTGAATGA
ATGTACATGCGAAATGAAAAAGGATTTACGTTAATTGAAATGCTAATTGTGTTAATGGTTATCACGATTTTAATTTTAAT
TACGATTCCAAATGTAACAAAGCATAACAGCATGATTAACAACAAAGGATGTTCAGCTTTTATAAAAATGGTTCAGTCCC
AGGTCAAAGCGTATGAAATGGAGCACGGTACAATTCCATCTGTTCAGCAATTAATAGATGGAAAATACATTGAAAGCAAC
CGTTGTCCGAATGGGAAAACGATTGTCATTACGAGTGAAGGGGACGTTTTAGAAGGTGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.556 |
90 |
0.5 |
| comGC | Staphylococcus aureus MW2 |
39.362 |
94 |
0.37 |
| comGC | Staphylococcus aureus N315 |
39.362 |
94 |
0.37 |