Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D7029_RS16935 Genome accession   NZ_CP032663
Coordinates   3704493..3705020 (+) Length   175 a.a.
NCBI ID   WP_194951334.1    Uniprot ID   -
Organism   Proteus vulgaris strain CCU063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3699493..3710020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7029_RS16930 (D7029_16995) uvrA 3701406..3704240 (-) 2835 WP_088494418.1 excinuclease ABC subunit UvrA -
  D7029_RS16935 (D7029_17000) ssb 3704493..3705020 (+) 528 WP_194951334.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D7029_RS16940 (D7029_17005) zur 3705382..3705912 (+) 531 WP_088494416.1 zinc uptake transcriptional repressor Zur -
  D7029_RS16945 (D7029_17010) - 3705946..3706250 (-) 305 Protein_3299 type II toxin-antitoxin system RelE family toxin -
  D7029_RS16950 (D7029_17015) - 3706240..3706495 (-) 256 Protein_3300 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  D7029_RS16955 (D7029_17020) lexA 3706656..3707267 (-) 612 WP_023583074.1 transcriptional repressor LexA -
  D7029_RS16960 (D7029_17025) - 3707395..3707766 (-) 372 WP_006536373.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18888.94 Da        Isoelectric Point: 4.9468

>NTDB_id=317697 D7029_RS16935 WP_194951334.1 3704493..3705020(+) (ssb) [Proteus vulgaris strain CCU063]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNVGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPV
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=317697 D7029_RS16935 WP_194951334.1 3704493..3705020(+) (ssb) [Proteus vulgaris strain CCU063]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACTTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAGAGCGGTCAAGACAGATATAGCACTGAAGTTGTTGTTAACGTTGG
CGGCTCAATGCAGATGTTAGGCGGCCGTGGCGGTCAAGATGGCGCACCTTCTCAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCACAATCTCGCCCAGCACAACAACCTGCTGCGGCACCAGTG
CCAAATAATGAACCACCAATGGATTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.973

100

0.771
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.594
  ssb Neisseria meningitidis MC58

49.162

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.503

Multiple sequence alignment