Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CFK76_RS09160 | Genome accession | NZ_CP032652 |
| Coordinates | 1810203..1810715 (-) | Length | 170 a.a. |
| NCBI ID | WP_011373726.1 | Uniprot ID | A0A094Y4Q3 |
| Organism | Latilactobacillus sakei strain LZ217 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1805203..1815715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFK76_RS09140 (CFK76_09140) | dnaB | 1805681..1807078 (-) | 1398 | WP_120760966.1 | replicative DNA helicase | - |
| CFK76_RS09145 (CFK76_09145) | rplI | 1807209..1807661 (-) | 453 | WP_011373728.1 | 50S ribosomal protein L9 | - |
| CFK76_RS09150 (CFK76_09150) | - | 1807682..1809715 (-) | 2034 | WP_016264315.1 | DHH family phosphoesterase | - |
| CFK76_RS09155 (CFK76_09155) | rpsR | 1809933..1810172 (-) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| CFK76_RS09160 (CFK76_09160) | ssb | 1810203..1810715 (-) | 513 | WP_011373726.1 | single-stranded DNA-binding protein | Machinery gene |
| CFK76_RS09165 (CFK76_09165) | rpsF | 1810754..1811050 (-) | 297 | WP_011373725.1 | 30S ribosomal protein S6 | - |
| CFK76_RS09170 (CFK76_09170) | gyrA | 1811287..1813860 (-) | 2574 | WP_016264314.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18610.19 Da Isoelectric Point: 4.6856
>NTDB_id=317609 CFK76_RS09160 WP_011373726.1 1810203..1810715(-) (ssb) [Latilactobacillus sakei strain LZ217]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=317609 CFK76_RS09160 WP_011373726.1 1810203..1810715(-) (ssb) [Latilactobacillus sakei strain LZ217]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssb | Glaesserella parasuis strain SC1401 |
33.69 |
100 |
0.371 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |