Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   E7Z57_RS02325 Genome accession   NZ_CP039339
Coordinates   455350..457440 (+) Length   696 a.a.
NCBI ID   WP_064049576.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 450350..462440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS02305 (E7Z57_02305) rsxB 450618..451424 (-) 807 WP_138928368.1 electron transport complex subunit RsxB -
  E7Z57_RS02310 (E7Z57_02310) - 451564..452283 (+) 720 WP_064049573.1 TetR/AcrR family transcriptional regulator -
  E7Z57_RS02315 (E7Z57_02315) - 452354..453622 (-) 1269 WP_064049575.1 polyhydroxyalkanoate depolymerase -
  E7Z57_RS02320 (E7Z57_02320) - 453837..455033 (-) 1197 WP_064049578.1 amino acid aminotransferase -
  E7Z57_RS02325 (E7Z57_02325) uvrB 455350..457440 (+) 2091 WP_064049576.1 excinuclease ABC subunit UvrB Machinery gene
  E7Z57_RS02330 (E7Z57_02330) - 457598..459688 (+) 2091 WP_138928369.1 site-specific recombinase -
  E7Z57_RS02335 (E7Z57_02335) rbsK 459713..460660 (-) 948 WP_064049579.1 ribokinase -
  E7Z57_RS02340 (E7Z57_02340) cytR 460697..461740 (-) 1044 WP_064049580.1 LacI family DNA-binding transcriptional regulator Regulator

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 78681.36 Da        Isoelectric Point: 5.4230

>NTDB_id=317308 E7Z57_RS02325 WP_064049576.1 455350..457440(+) (uvrB) [Ralstonia pseudosolanacearum strain UW386]
MTDLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPAI
VFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLMERRDVVIVAT
VSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEV
DSLQLFDPLTGRVRQKIPRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQELG
FCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE
FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQ
LTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQDAAKYED
MSEKQVGKEIKRLEKQMLDHAKNLEFEKAASVRDQLAKLKSQVFGASGEDHIVPAA

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=317308 E7Z57_RS02325 WP_064049576.1 455350..457440(+) (uvrB) [Ralstonia pseudosolanacearum strain UW386]
ATGACCGACCTCAGCCAAGTCCCCAGCCCGTACGACGAGTCGAAGTTCGTCACATTCGACGGCTCGCCGTTCCAGCTGTA
CCAGCCGTATCCGCCCGCCGGCGACCAGCCCGAGGCGATCCGCCAACTGGTCGAGGGCATCGGTGACGGCCTGTCGTACC
AGACGCTGCTGGGCGTGACGGGCTCGGGCAAGACCTACACGATGGCCAACGTGATCGCGCAGGCGGGGCGGCCCGCGATC
GTGTTCGCGCCCAACAAGACGCTGGCGGCGCAGCTGTATTCGGAGTTCCGCGAGTTCTTCCCGCGCAATGCGGTCGAGTA
TTTCGTCTCGTACTACGACTACTACCAGCCGGAAGCGTACGTGCCGCAGCGCGACCTGTTCATCGAGAAGGACTCGTCGG
TCAACGAGCATATCGAGCAGATGCGGCTGTCGGCCACCAAGAGCCTGATGGAGCGGCGCGATGTGGTGATCGTGGCGACC
GTGTCGGCCATCTACGGTATCGGCAATCCGACCGAATACCACCAGATGATCCTGACGCTGCGCACCGGCGACAAGATCAG
CCAGCGCGACGTGATCGCGCGCCTGATCGCCATGCAGTACACGCGCAACGAGACGGATTTCCAGCGCGGCACCTTCCGCG
TGCGCGGCGACACCGTCGACATCTTTCCCGCCGAGCACGCCGAGATGGCGGTGCGGCTGGAGCTGTTCGACGACGAGGTC
GATTCGCTGCAGCTGTTCGATCCGCTCACCGGGCGGGTGCGGCAGAAGATTCCGCGCTTCACGGTGTACCCGTCGAGCCA
CTACGTGACGCCGCGCGAGACCGTGCTGCGCGCCATCGGGACCATCAAGGCCGAGCTGCGCGAGCGGCTGGATTTCTTCT
ACCAGGAGAACAAGCTGGTCGAGGCGCAGCGCCTGGAGCAGCGCACGCGCTTCGATCTGGAGATGCTGCAGGAGCTGGGC
TTCTGCAAGGGCATCGAGAACTATTCGCGGCACCTGTCCGGCGCCCAGCCGGGCGAGCCGCCCCCGACCCTGGTCGACTA
CCTGCCGTCCGACGCGCTGATGTTCCTGGACGAGTCGCACGTGCTGATCGGCCAGCTCAACGGCATGTACAACGGCGACC
GCGCGCGCAAGGAGACGCTGTCCGCGTATGGCTTCCGCCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTTCGCCGAG
TTCGAGGGCAAGATGCGGCAGGTGGTCTTCGTGTCCGCCACGCCGGCCGACTACGAGAAGCAGCGCGCCGGCGACGAGGT
GGTCGAGCAGGTGGTGCGGCCCACGGGCCTGGTCGATCCGATCATCCACGTGCGGCCGGCCACCACGCAGGTGGACGACC
TGCTGTCGGAGATCCACGAGCGCGTCAAGGCAGGCGAGCGCGTGCTGGTCACCACGCTCACCAAGCGCATGGCCGAGCAG
TTGACCGAGTTCCTGTCGGAAAACGGCGTCAAGGTCCGCTACCTGCACTCGGACATCGACACGGTCGAGCGCGTGGAGAT
CATCCGCGACCTGCGGCTGGGCACCTTCGACGTGCTGGTCGGCATCAACCTGCTGCGCGAGGGGCTGGACATTCCCGAGG
TGTCGCTGGTGGCCATCCTCGACGCCGACAAGGAAGGCTTCCTGCGTGCCGAGCGCTCGCTGATCCAGACCATCGGCCGC
GCCGCGCGCAACGTCAACGGCACCGCCATCCTCTATGGGGATCGCATCACCGAGTCGATGAAGAAGGCCATCGGCGAGAC
CGAGCGGCGCCGCGCCAAGCAGATCGCCCACAACGAGGCCCACGGCATCACGCCGCGCGGCGTGGTCAAGCGCATCAAGG
ACATCATCGACGGCGTGTACAACGTCGACGATGCGCGCGCGGAACTGAAGGCCGCGCAGGATGCCGCCAAGTACGAAGAC
ATGAGCGAGAAGCAGGTCGGCAAGGAAATCAAGCGTCTCGAAAAGCAGATGCTCGACCACGCCAAGAACCTGGAATTCGA
GAAGGCGGCTTCGGTGCGCGACCAACTGGCCAAGCTCAAGTCGCAGGTCTTCGGCGCCAGCGGCGAAGACCACATCGTGC
CGGCGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(454-563)

Ultra-violet resistance protein B (UvrB)

(571-613)

UvrB/uvrC motif (UVR)

(648-682)

Type III restriction enzyme, res subunit (ResIII)

(36-157)

UvrB interaction domain (UvrB_inter)

(178-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.647

95.115

0.539
  uvrB Streptococcus pneumoniae R6

56.495

95.115

0.537
  uvrB Streptococcus pneumoniae D39

56.495

95.115

0.537